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Max E. Wilkinson et al.
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Karla M. Neugebauer
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Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast
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Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
Hagen Tilgner et al.
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RNA Polymerase II Phosphorylated on CTD Serine 5 Interacts with the Spliceosome during Co-transcriptional Splicing
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Sunjoo Jeong
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Splicing and transcription touch base: co-transcriptional spliceosome assembly and function
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Alternative splicing as a regulator of development and tissue identity
Francisco E. Baralle et al.
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Widespread intra-dependencies in the removal of introns from human transcripts
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RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit
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Widespread Inducible Transcription Downstream of Human Genes
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Recursive splicing in long vertebrate genes
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The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome
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Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma
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Global transcriptome analyses of human and murine terminal erythroid differentiation
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Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
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Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications
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A Splicing-Dependent Transcriptional Checkpoint Associated with Prespliceosome Formation
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Kinetic competition during the transcription cycle results in stochastic RNA processing
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Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
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The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus (vol 151, pg 750, 2012)
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An encyclopedia of mouse DNA elements (Mouse ENCODE)
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Quality control and preprocessing of metagenomic datasets
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Joanna Y. Ip et al.
GENOME RESEARCH (2011)
Nascent transcript sequencing visualizes transcription at nucleotide resolution
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Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3′ end of human genes
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BEDTools: a flexible suite of utilities for comparing genomic features
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Splicing-Dependent RNA Polymerase Pausing in Yeast
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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
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RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3′-end processing in Saccharomyces cerevisiae
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The Sequence Alignment/Map format and SAMtools
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Co-transcriptional splicing of constitutive and alternative exons
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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Nought May Endure but Mutability: Spliceosome dynamics and the regulation of splicing
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In vivo selection of genetically modified erythroblastic progenitors leads to long-term correction of β-thalassemia
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Humanized β-thalassemia mouse model containing the common IVSI-110 splicing mutation
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Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
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A slow RNA polymerase II affects alternative splicing in vivo
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Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells
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