相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Extinction of one of the world's largest freshwater fishes: Lessons for conserving the endangered Yangtze fauna
Hui Zhang et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2020)
Three-dimensional characterization of osteocyte volumes at multiple scales, and its relationship with bone biology and genome evolution in ray-finned fishes
Donald Davesne et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2020)
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Kang Du et al.
NATURE ECOLOGY & EVOLUTION (2020)
Divergence, evolution and adaptation in ray-finned fish genomes
Chao Bian et al.
SCIENCE CHINA-LIFE SCIENCES (2019)
Whole-Genome Sequencing of the Giant Devil Catfish, Bagarius yarrelli
Wansheng Jiang et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Draft Genome and Complete Hox-Cluster Characterization of the Sterlet (Acipenser ruthenus)
Peilin Cheng et al.
FRONTIERS IN GENETICS (2019)
Patterns of microchromosome organization remain highly conserved throughout avian evolution
Rebecca E. O'Connor et al.
CHROMOSOMA (2019)
Understanding the Evolution of Reptile Chromosomes through Applications of Combined Cytogenetics and Genomics Approaches
Janine E. Deakin et al.
CYTOGENETIC AND GENOME RESEARCH (2019)
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
Lily C. Hughes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Assessing the genetic diversity of the critically endangered Chinese sturgeon Acipenser sinensis using mitochondrial markers and genome-wide single-nucleotide polymorphisms from RAD-seq
Jian Liu et al.
SCIENCE CHINA-LIFE SCIENCES (2018)
The Divergent Genomes of Teleosts
Vydianathan Ravi et al.
ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 6 (2018)
SCPP Genes and Their Relatives in Gar: Rapid Expansion of Mineralization Genes in Osteichthyans
Kazuhiko Kawasaki et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2017)
A reference human genome dataset of the BGISEQ-500 sequencer
Jie Huang et al.
GIGASCIENCE (2017)
Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification
Fiona M. Robertson et al.
GENOME BIOLOGY (2017)
Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula)
Radka Symonova et al.
BMC GENETICS (2017)
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Ingo Braasch et al.
NATURE GENETICS (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts
Chao Bian et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant et al.
GENOME BIOLOGY (2015)
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
Marten Boetzer et al.
BMC BIOINFORMATICS (2014)
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Rei Kajitani et al.
GENOME RESEARCH (2014)
Elephant shark genome provides unique insights into gnathostome evolution
Byrappa Venkatesh et al.
NATURE (2014)
Genome sequence and genetic diversity of the common carp, Cyprinus carpio
Peng Xu et al.
NATURE GENETICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
GapFiller: a de novo assembly approach to fill the gap within paired reads
Francesca Nadalin et al.
BMC BIOINFORMATICS (2012)
An Independent Genome Duplication Inferred from Hox Paralogs in the American Paddlefish-A Representative Basal Ray-Finned Fish and Important Comparative Reference
Karen D. Crow et al.
GENOME BIOLOGY AND EVOLUTION (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives): The first evidence based on whole mitogenome sequences
Davin H. E. Setiamarga et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Morphological and molecular evidence for a stepwise evolutionary transition from teeth to baleen in mysticete whales
Thomas A. Demere et al.
SYSTEMATIC BIOLOGY (2008)
Icefish (Salangidae) as an indicator of anthropogenic pollution in freshwater systems using nitrogen isotope analysis
Jun Xu et al.
BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Creating a honey bee consensus gene set
Christine G. Elsik et al.
GENOME BIOLOGY (2007)
Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
Xiao-Jing Yu et al.
GENOMICS (2006)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Phylogenetic conservation of chromosome numbers in Actinopterygiian fishes
Judith E. Mank et al.
GENETICA (2006)
DMP1 depletion decreases bone mineralization in vivo: An FTIR imaging analysis
YF Ling et al.
JOURNAL OF BONE AND MINERAL RESEARCH (2005)
Two rounds of whole genome duplication in the ancestral vertebrate
P Dehal et al.
PLOS BIOLOGY (2005)
Automated generation of heuristics for biological sequence comparison
GS Slater et al.
BMC BIOINFORMATICS (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
K Vandepoele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
S Aparicio et al.
SCIENCE (2002)
分享论文
