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Willy R. Wriggers et al.
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Shuai Yuan et al.
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Yi-Lynn Liang et al.
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Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-Å resolution and its relevance to the assembly of icosahedral viruses
Zhenguo Chen et al.
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Trends in the Electron Microscopy Data Bank (EMDB)
Ardan Patwardhan
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2017)
Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment
Agnel Praveen Joseph et al.
METHODS (2016)
Single-Particle Cryo-EM at Crystallographic Resolution
Yifan Cheng
CELL (2015)
A Knee Point-Driven Evolutionary Algorithm for Many-Objective Optimization
Xingyi Zhang et al.
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2015)
Phosphorus detection in vitrified bacteria by cryo-STEM annular dark-field analysis
Sharon Grayer Wolf et al.
JOURNAL OF MICROSCOPY (2015)
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement
Frank DiMaio et al.
NATURE METHODS (2015)
The I-TASSER Suite: protein structure and function prediction
Jianyi Yang et al.
NATURE METHODS (2015)
Atomic-resolution structure of the CAP-Gly domain of dynactin on polymeric microtubules determined by magic angle spinning NMR spectroscopy
Si Yan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit
Gydo C. P. van Zundert et al.
AIMS BIOPHYSICS (2015)
ATTRACT-EM: A New Method for the Computational Assembly of Large Molecular Machines Using Cryo-EM Maps
Sjoerd J. de Vries et al.
PLOS ONE (2012)
EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps
Steffen Lindert et al.
STRUCTURE (2012)
BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement
Nils Woetzel et al.
JOURNAL OF STRUCTURAL BIOLOGY (2011)
How significant is a protein structure similarity with TM-score=0.5?
Jinrui Xu et al.
BIOINFORMATICS (2010)
Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography
James E. Voss et al.
NATURE (2010)
Cryo-EM of macromolecular assemblies at near-atomic resolution
Matthew L. Baker et al.
NATURE PROTOCOLS (2010)
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map
Keren Lasker et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Inferential Optimization for Simultaneous Fitting of Multiple Components into a CryoEM Map of Their Assembly
Keren Lasker et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta
Frank DiMaio et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Multi-Objective Particle Swarm Optimization with time variant inertia and acceleration coefficients
Praveen Kumar Tripathi et al.
INFORMATION SCIENCES (2007)
ADP_EM:: fast exhaustive multi-resolution docking for high-throughput coverage
Jose Ignacio Garzon et al.
BIOINFORMATICS (2007)
EMatch: Discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps
Keren Lasker et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2007)
EMAN2: An extensible image processing suite for electron microscopy
Guang Tang et al.
JOURNAL OF STRUCTURAL BIOLOGY (2007)
SPICKER:: A clustering approach to identify near-native protein folds
Y Zhang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Scoring function for automated assessment of protein structure template quality
Y Zhang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
XMIPP:: a new generation of an open-source image processing package for electron microscopy
COS Sorzano et al.
JOURNAL OF STRUCTURAL BIOLOGY (2004)
Handling multiple objectives with particle swarm optimization
CAC Coello et al.
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2004)
Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization
H Ceulemans et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
The structure of the aquaporin-1 water channel:: A comparison between cryo-electron microscopy and X-ray crystallography
BL de Groot et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Multi-resolution contour-based fitting of macromolecular structures
P Chacón et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Combining electron microscopic with X-ray crystallographic structures
MG Rossmann et al.
JOURNAL OF STRUCTURAL BIOLOGY (2001)
Structure of membrane-bound annexin A5 trimers:: A hybrid Cryo-EM -: X-ray crystallography study
F Oling et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Protein domain decomposition using a graph-theoretic approach
Y Xu et al.
BIOINFORMATICS (2000)
SCOP: a Structural Classification of Proteins database
L Lo Conte et al.
NUCLEIC ACIDS RESEARCH (2000)