相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags
Gabriel Renaud et al.
BMC BIOINFORMATICS (2014)
Coordinate changes in gene expression and triacylglycerol composition in the developing seeds of oilseed rape (Brassica napus) and turnip rape (Brassica rapa)
Anssi L. Vuorinen et al.
FOOD CHEMISTRY (2014)
Differentially Expressed Genes during Flowering and Grain Filling in Common Bean (Phaseolus vulgaris) Grown under Drought Stress Conditions
Barbara Salomao de Faria Mueller et al.
PLANT MOLECULAR BIOLOGY REPORTER (2014)
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
Margaret R. Woodhouse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Use of digital gene expression to discriminate gene expression differences in early generations of resynthesized Brassica napus and its diploid progenitors
Jinjin Jiang et al.
BMC GENOMICS (2013)
Transcriptome Profile Analysis of Maize Seedlings in Response to High-salinity, Drought and Cold Stresses by Deep Sequencing
Xiaohui Shan et al.
PLANT MOLECULAR BIOLOGY REPORTER (2013)
Tracing the Transcriptomic Changes in Synthetic Trigenomic allohexaploids of Brassica Using an RNA-Seq Approach
Qin Zhao et al.
PLOS ONE (2013)
Accessing complex crop genomes with next-generation sequencing
David Edwards et al.
THEORETICAL AND APPLIED GENETICS (2013)
A COMPARATIVE TRANSCRIPTOMIC STUDY OF AN ALLOTETRAPLOID AND ITS DIPLOID PROGENITORS ILLUSTRATES THE UNIQUE ADVANTAGES AND CHALLENGES OF RNA-SEQ IN PLANT SPECIES
Daniel C. Ilut et al.
AMERICAN JOURNAL OF BOTANY (2012)
Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
Janet Higgins et al.
BMC GENOMICS (2012)
Revisiting Global Gene Expression Analysis
Jakob Loven et al.
CELL (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
The draft genome of a diploid cotton Gossypium raimondii
Kunbo Wang et al.
NATURE GENETICS (2012)
Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa
Jun Wang et al.
BMC GENOMICS (2011)
Nutritional and nutraceutical potential of rape (Brassica napus L. var. napus) and tronchuda cabbage (Brassica oleraceae L. var. costata) inflorescences
Catia Batista et al.
FOOD AND CHEMICAL TOXICOLOGY (2011)
Genome sequence and analysis of the tuber crop potato
Xun Xu et al.
NATURE (2011)
Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing
Ian Bancroft et al.
NATURE BIOTECHNOLOGY (2011)
The genome of the mesopolyploid crop species Brassica rapa
Xiaowu Wang et al.
NATURE GENETICS (2011)
Polyploid formation pathways have an impact on genetic rearrangements in resynthesized Brassica napus
E. Szadkowski et al.
NEW PHYTOLOGIST (2011)
Proteomic Changes in Newly Synthesized Brassica napus Allotetraploids and Their Early Generations
Fang Kong et al.
PLANT MOLECULAR BIOLOGY REPORTER (2011)
Genome structure affects the rate of autosyndesis and allosyndesis in AABC, BBAC and CCAB Brassica interspecific hybrids
Annaliese S. Mason et al.
CHROMOSOME RESEARCH (2010)
Genomic and expression plasticity of polyploidy
Scott Jackson et al.
CURRENT OPINION IN PLANT BIOLOGY (2010)
Quantifying Whole Transcriptome Size, a Prerequisite for Understanding Transcriptome Evolution Across Species: An Example from a Plant Allopolyploid
Jeremy E. Coate et al.
GENOME BIOLOGY AND EVOLUTION (2010)
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz et al.
NATURE (2010)
Homoeologous recombination in allopolyploids: the polyploid ratchet
Robert T. Gaeta et al.
NEW PHYTOLOGIST (2010)
The first meiosis of resynthesized Brassica napus, a genome blender
E. Szadkowski et al.
NEW PHYTOLOGIST (2010)
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li et al.
BIOINFORMATICS (2009)
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences
Martin Trick et al.
BMC PLANT BIOLOGY (2009)
Epigenetic regulation of stress responses in plants
Viswanathan Chinnusamy et al.
CURRENT OPINION IN PLANT BIOLOGY (2009)
Next-generation tag sequencing for cancer gene expression profiling
A. Sorana Morrissy et al.
GENOME RESEARCH (2009)
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
Martin Trick et al.
PLANT BIOTECHNOLOGY JOURNAL (2009)
Comparative Analysis between Homoeologous Genome Segments of Brassica napus and Its Progenitor Species Reveals Extensive Sequence-Level Divergence
Foo Cheung et al.
PLANT CELL (2009)
Rapid alterations of gene expression and cytosine methylation in newly synthesized Brassica napus allopolyploids
Yanhao Xu et al.
PLANTA (2009)
Analysis of Gene Expression in Resynthesized Brassica napus Allopolyploids Using Arabidopsis 70mer Oligo Microarrays
Robert T. Gaeta et al.
PLOS ONE (2009)
Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers:: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
Priya Panjabi et al.
BMC GENOMICS (2008)
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
Peter A. C. 't Hoen et al.
NUCLEIC ACIDS RESEARCH (2008)
Perspective - Genomic plasticity and the diversity of polyploid plants
A. R. Leitch et al.
SCIENCE (2008)
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
Robert T. Gaeta et al.
PLANT CELL (2007)
Mapping of yield influencing QTL in Brassica juncea:: implications for reeding of a major oilseed crop of dryland areas
N. Ramchiary et al.
THEORETICAL AND APPLIED GENETICS (2007)
The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes
M. Eric Schranz et al.
TRENDS IN PLANT SCIENCE (2006)
Plastid genome characterisation in Brassica and Brassicaceae using a new set of nine SSRs
M. L. Flannery et al.
THEORETICAL AND APPLIED GENETICS (2006)
WEGO: a web tool for plotting GO annotations
Jia Ye et al.
NUCLEIC ACIDS RESEARCH (2006)
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
Christopher D. Town et al.
PLANT CELL (2006)
Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa
Tae-Jin Yang et al.
PLANT CELL (2006)
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
LN Lukens et al.
PLANT PHYSIOLOGY (2006)
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
JL Wang et al.
GENETICS (2006)
Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
IAP Parkin et al.
GENETICS (2005)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
Chromosome triplication found across the tribe Brassiceae
MA Lysak et al.
GENOME RESEARCH (2005)
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
XL He et al.
GENETICS (2005)
The contribution of polyploidy to variation in Brassica species
TC Osborn
PHYSIOLOGIA PLANTARUM (2004)
Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives
D Rana et al.
PLANT JOURNAL (2004)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
KL Adams et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
MA Koch et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)