4.7 Article

The origin and evolution of a distinct mechanism of transcription initiation in yeasts

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq

Robert A. Policastro et al.

GENOME RESEARCH (2020)

Article Biotechnology & Applied Microbiology

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Chenxi Qiu et al.

GENOME BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae

Zhaolian Lu et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

Malte Thodberg et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Mathematical & Computational Biology

YeasTSS: an integrative web database of yeast transcription start sites

Jonathan McMillan et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2019)

Article Biotechnology & Applied Microbiology

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

Christoph S. Borlin et al.

FEMS YEAST RESEARCH (2019)

Article Biochemistry & Molecular Biology

Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data

Pieter Spealman et al.

GENOME RESEARCH (2018)

Review Cell Biology

Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them

Kathrin Leppek et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Article Biochemical Research Methods

Comprehensive comparative analysis of 5'-end RNA-sequencing methods

Xian Adiconis et al.

NATURE METHODS (2018)

Article Biochemistry & Molecular Biology

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Biochemistry & Molecular Biology

Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals

Yong Xue et al.

MOLECULAR CELL (2017)

Article Genetics & Heredity

Promoter shape varies across populations and affects promoter evolution and expression noise

Ignacio E. Schor et al.

NATURE GENETICS (2017)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Genome-wide analysis of core promoter structures in Schizosaccharomyces pombe with DeepCAGE

Hua Li et al.

RNA BIOLOGY (2015)

Article Evolutionary Biology

Intron Evolution in Saccharomycetaceae

Katarzyna B. Hooks et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing

Joshua A. Arribere et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

Structure and function of the initially transcribing RNA polymerase II-TFIIB complex

Sarah Sainsbury et al.

NATURE (2013)

Article Multidisciplinary Sciences

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning

Georgette Moyle-Heyrman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Architecture of the Yeast RNA Polymerase II Open Complex and Regulation of Activity by TFIIF

James Fishburn et al.

MOLECULAR AND CELLULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Evolution of 5′ Untranslated Region Length and Gene Expression Reprogramming in Yeasts

Zhenguo Lin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

A map of nucleosome positions in yeast at base-pair resolution

Kristin Brogaard et al.

NATURE (2012)

Article Multidisciplinary Sciences

Genome-wide structure and organization of eukaryotic pre-initiation complexes

Ho Sung Rhee et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

Estimating divergence times in large molecular phylogenies

Koichiro Tamura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biology

Transposable elements in yeasts

Claudine Bleykasten-Grosshans et al.

COMPTES RENDUS BIOLOGIES (2011)

Article Biochemistry & Molecular Biology

Genome-wide analysis of promoter architecture in Drosophila melanogaster

Roger A. Hoskins et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

A Conserved GA Element in TATA-Less RNA Polymerase II Promoters

Martin Seizl et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Comparative Functional Genomics of the Fission Yeasts

Nicholas Rhind et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

Three Key Subregions Contribute to the Function of the Downstream RNA Polymerase II Core Promoter

Joshua W. M. Theisen et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

RNA polymerase II-TFIIB structure and mechanism of transcription initiation

Dirk Kostrewa et al.

NATURE (2009)

Review Genetics & Heredity

The functional consequences of alternative promoter use in mammalian genomes

Ramana V. Davuluri et al.

TRENDS IN GENETICS (2008)

Article Genetics & Heredity

Genome-wide analysis of mammalian promoter architecture and evolution

Piero Carninci et al.

NATURE GENETICS (2006)

Article Biochemistry & Molecular Biology

Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model

Jason N. Kuehner et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemical Research Methods

CAGE: cap analysis of gene expression

R Kodzius et al.

NATURE METHODS (2006)

Article Multidisciplinary Sciences

The transcriptional landscape of the mammalian genome

P Carninci et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Mapping of transcription start sites in Saccharomyces cerevisiae using 5 ' SAGE

ZH Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Identification and distinct regulation of yeast TATA box-containing genes

AD Basehoar et al.

Article Biochemistry & Molecular Biology

FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

K Suhre et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

In vitro transcription and start site selection in Schizosaccharomyces pombe

WS Choi et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

A chromatin remodelling complex involved in transcription and DNA processing

XT Shen et al.

NATURE (2000)