4.5 Article

Phylogenomics reveals accelerated late Cretaceous diversification of bee flies (Diptera: Bombyliidae)

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Evolutionary Biology

Phylogeny, classification and biogeography of bombyliine bee flies (Diptera, Bombyliidae)

Xuankun Li et al.

SYSTEMATIC ENTOMOLOGY (2019)

Article Biochemistry & Molecular Biology

Molecular phylogeny and evolution of world Tachinidae (Diptera)

John O. Stireman et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Biochemistry & Molecular Biology

UFBoot2: Improving the Ultrafast Bootstrap Approximation

Diep Thi Hoang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Early Cretaceous greenhouse pumped higher taxa diversification in spiders

Lili Shao et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

Article Evolutionary Biology

New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae)

Thomas Pauli et al.

SYSTEMATIC ENTOMOLOGY (2018)

Article Biochemistry & Molecular Biology

MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons

Vincent Ranwez et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids

Jessica P. Gillung et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Evolutionary history of a keystone pollinator parallels the biome occupancy of angiosperms in the Greater Cape Floristic Region

Marinus L. de Jager et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Evolutionary Biology

More on the Best Evolutionary Rate for Phylogenetic Analysis

Seraina Klopfstein et al.

SYSTEMATIC BIOLOGY (2017)

Article Multidisciplinary Sciences

BBMerge - Accurate paired shotgun read merging via overlap

Brian Bushnell et al.

PLOS ONE (2017)

Article Biochemistry & Molecular Biology

Evolutionary History of the Hymenoptera

Ralph S. Peters et al.

CURRENT BIOLOGY (2017)

Article Biochemical Research Methods

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes

Malte Petersen et al.

BMC BIOINFORMATICS (2017)

Article Biodiversity Conservation

Diverse Orthorrhaphan Flies (Insecta: Diptera: Brachycera) in Amber From the Cretaceous of Myanmar: Brachycera in Cretaceous Amber, Part VII

David A. Grimaldi

BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY (2016)

Article Evolutionary Biology

TNT version 1.5, including a full implementation of phylogenetic morphometrics

Pablo A. Goloboff et al.

CLADISTICS (2016)

Article Multidisciplinary Sciences

AMAS: a fast tool for alignment manipulation and computing of summary statistics

Marek L. Borowiec

Article Biochemistry & Molecular Biology

Explosive radiation or uninformative genes? Origin and early diversification of tachinid flies (Diptera: Tachinidae)

Isaac S. Winkler et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

Yan Yu et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

AliView: a fast and lightweight alignment viewer and editor for large datasets

Anders Larsson

BIOINFORMATICS (2014)

Article Biochemical Research Methods

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

Yinlong Xie et al.

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

The fossilized birth-death process for coherent calibration of divergence-time estimates

Tracy A. Heath et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Phylogenomics resolves the timing and pattern of insect evolution

Bernhard Misof et al.

SCIENCE (2014)

Article Evolutionary Biology

Signal through the noise? Phylogeny of the Tachinidae (Diptera) as inferred from morphological evidence

Pierfilippo Cerretti et al.

SYSTEMATIC ENTOMOLOGY (2014)

Article Biochemical Research Methods

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Review Entomology

The Impact of Molecular Data on Our Understanding of Bee Phylogeny and Evolution

Bryan N. Danforth et al.

ANNUAL REVIEW OF ENTOMOLOGY, VOL 58 (2013)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

Robert M. Waterhouse et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Evolutionary Biology

The phylogenetic relationships among infraorders and superfamilies of Diptera based on morphological evidence

Christine L. Lambkin et al.

SYSTEMATIC ENTOMOLOGY (2013)

Article Biochemistry & Molecular Biology

Statistics and Truth in Phylogenomics

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates

Si Quang Le et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

Episodic radiations in the fly tree of life

Brian M. Wiegmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Paleontology

The oldest bee fly in the French Paleocene (Diptera: Bombyliidae)

Andre Nel

COMPTES RENDUS PALEVOL (2008)

Article Biochemistry & Molecular Biology

An improved general amino acid replacement matrix

Si Quang Le et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Multidisciplinary Sciences

DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists

M. Alex Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences

F Ababneh et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Relaxed phylogenetics and dating with confidence

Alexei J. Drummond et al.

PLOS BIOLOGY (2006)

Article Multidisciplinary Sciences

Phylogeny of the ants: Diversification in the age of angiosperms

CS Moreau et al.

SCIENCE (2006)

Review Genetics & Heredity

Phylogenomics: the beginning of incongruence?

O Jeffroy et al.

TRENDS IN GENETICS (2006)