相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Defining trained immunity and its role in health and disease
Mihai G. Netea et al.
NATURE REVIEWS IMMUNOLOGY (2020)
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia
Spencer C. Peck et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Metabolism the Difficile Way: The Key to the Success of the Pathogen Clostridioides difficile
Meina Neumann-Schaal et al.
FRONTIERS IN MICROBIOLOGY (2019)
The ancestral and industrialized gut microbiota and implications for human health
Erica D. Sonnenburg et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Laboratory mice born to wild mice have natural microbiota and model human immune responses
Stephan P. Rosshart et al.
SCIENCE (2019)
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
Yingyao Zhou et al.
NATURE COMMUNICATIONS (2019)
Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis
Jeffrey R. Singer et al.
NATURE MEDICINE (2019)
Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice
Sandra Y. Wotzka et al.
NATURE MICROBIOLOGY (2019)
Mouse Genome Database (MGD) 2019
Carol J. Bult et al.
NUCLEIC ACIDS RESEARCH (2019)
Long-Term Effects of Early-Life Antibiotic Exposure on Resistance to Subsequent Bacterial Infection
Claire Roubaud-Baudron et al.
MBIO (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Bile acid-microbiota crosstalk in gastrointestinal inflammation and carcinogenesis
Wei Jia et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Temporal development of the gut microbiome in early childhood from the TEDDY study
Christopher J. Stewart et al.
NATURE (2018)
White Adipose Tissue Is a Reservoir for Memory T Cells and Promotes Protective Memory Responses to Infection
Seong-Ji Han et al.
IMMUNITY (2017)
The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens
Sohn Kim et al.
IMMUNOLOGICAL REVIEWS (2017)
Comprehensive Arrayed Transposon Mutant Library of Klebsiella pneumoniae Outbreak Strain KPNIH1
Beth Ramage et al.
JOURNAL OF BACTERIOLOGY (2017)
Mechanisms of bile acid mediated inflammation in the liver
Man Li et al.
MOLECULAR ASPECTS OF MEDICINE (2017)
Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis
Franziska Faber et al.
PLOS PATHOGENS (2017)
The path towards microbiome-based metabolite treatment
Jotham Suez et al.
NATURE MICROBIOLOGY (2017)
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
Stephan P. Rosshart et al.
CELL (2017)
Sulfur Cycling and the Intestinal Microbiome
Larry L. Barton et al.
DIGESTIVE DISEASES AND SCIENCES (2017)
How nutrition and the maternal microbiota shape the neonatal immune system
Andrew J. Macpherson et al.
NATURE REVIEWS IMMUNOLOGY (2017)
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients
Claire L. Gorrie et al.
CLINICAL INFECTIOUS DISEASES (2017)
Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella
Fabian Rivera-Chavez et al.
CELL HOST & MICROBE (2016)
Genetic and Metabolic Signals during Acute Enteric Bacterial Infection Alter the Microbiota and Drive Progression to Chronic Inflammatory Disease
Karishma Kamdar et al.
CELL HOST & MICROBE (2016)
Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response
Tiffany A. Reese et al.
CELL HOST & MICROBE (2016)
Host Selection of Microbiota via Differential Adhesion
Kirstie McLoughlin et al.
CELL HOST & MICROBE (2016)
Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism
Annika Wahlstrom et al.
CELL METABOLISM (2016)
Normalizing the environment recapitulates adult human immune traits in laboratory mice
Lalit K. Beura et al.
NATURE (2016)
The design and analysis of transposon insertion sequencing experiments
Michael C. Chao et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration
Christopher A. Lopez et al.
SCIENCE (2016)
Helminth infection promotes colonization resistance via type 2 immunity
Deepshika Ramanan et al.
SCIENCE (2016)
Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization
Sean Conlan et al.
MBIO (2016)
A Commensal Bacterium Promotes Virulence of an Opportunistic Pathogen via Cross-Respiration
Apollo Stacy et al.
MBIO (2016)
The Terminal Oxidase Cytochrome bd Promotes Sulfide-resistant Bacterial Respiration and Growth
Elena Forte et al.
SCIENTIFIC REPORTS (2016)
Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum
Juber Herrera Uribe et al.
VETERINARY RESEARCH (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Regulators of Gut Motility Revealed by a Gnotobiotic Model of Diet-Microbiome Interactions Related to Travel
Neelendu Dey et al.
CELL (2015)
Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling
Maayan Levy et al.
CELL (2015)
Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity
Denise Morais da Fonseca et al.
CELL (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Identification of a probiotic bacteria-derived activator of the aryl hydrocarbon receptor that inhibits colitis
Suguru Fukumoto et al.
IMMUNOLOGY AND CELL BIOLOGY (2014)
Fecal microbiota transplantation: effectiveness, complexities, and lingering concerns
E. G. Pamer
MUCOSAL IMMUNOLOGY (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
Complete Genome Sequence of Klebsiella pneumoniae Strain ATCC 43816 KPPR1, a Rifampin-Resistant Mutant Commonly Used in Animal, Genetic, and Molecular Biology Studies
Christopher A. Broberg et al.
GENOME ANNOUNCEMENTS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Enterohepatic bacterial infections dysregulate the FGF15-FGFR4 endocrine axis
Guillaume Romain et al.
BMC MICROBIOLOGY (2013)
Intraluminal Containment of Commensal Outgrowth in the Gut during Infection-Induced Dysbiosis
Michael J. Molloy et al.
CELL HOST & MICROBE (2013)
Effective T-cell recall responses require the taurine transporter Taut
Susanne Kaesler et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries
Andrew L. Goodman et al.
NATURE PROTOCOLS (2011)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
A murine model of urinary tract infection
Chia-Suei Hung et al.
NATURE PROTOCOLS (2009)
ExplorEnz: the primary source of the IUBMB enzyme list
Andrew G. McDonald et al.
NUCLEIC ACIDS RESEARCH (2009)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Role of xanthine oxidoreductase as an antimicrobial agent
HM Martin et al.
INFECTION AND IMMUNITY (2004)
分享论文
