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A random forest based computational model for predicting novel lncRNA-disease associations
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Marissa Sumathipala et al.
SCIENTIFIC REPORTS (2020)
iCDA-CGR: Identification of circRNA-disease associations based on Chaos Game Representation
Kai Zheng et al.
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Mohadeseh Esmaeili et al.
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Hai-Cheng Yi et al.
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Xiujuan Lei et al.
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Chunyan Fan et al.
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Cheng Yan et al.
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Integrating Multiple Heterogeneous Networks for Novel LncRNA-Disease Association Inference
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Zhenyu Bao et al.
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CircFunBase: a database for functional circular RNAs
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Circbank: a comprehensive database for circRNA with standard nomenclature
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Ping Xuan et al.
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Lei Deng et al.
SCIENTIFIC REPORTS (2019)
MLMDA: a machine learning approach to predict and validate MicroRNA-disease associations by integrating of heterogenous information sources
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WBNPMD: weighted bipartite network projection for microRNA-disease association prediction
Guobo Xie et al.
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Jia Qu et al.
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Qi Zhao et al.
IEEE TRANSACTIONS ON NANOBIOSCIENCE (2019)
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Zhengfeng Wang et al.
MOLECULES (2019)
Computational Prediction of Human Disease- Associated circRNAs Based on Manifold Regularization Learning Framework
Qiu Xiao et al.
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS (2019)
A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases
Haochen Zhao et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
HMDD v3.0: a database for experimentally supported human microRNA-disease associations
Zhou Huang et al.
NUCLEIC ACIDS RESEARCH (2019)
Human Disease Ontology 2018 update: classification, content and workflow expansion
Lynn M. Schriml et al.
NUCLEIC ACIDS RESEARCH (2019)
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse
Liang Cheng et al.
NUCLEIC ACIDS RESEARCH (2019)
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers
Yue Gao et al.
NUCLEIC ACIDS RESEARCH (2019)
An integrated framework for the identification of potential miRNA-disease association based on novel negative samples extraction strategy
Chun-Chun Wang et al.
RNA BIOLOGY (2019)
IDLDA: An Improved Diffusion Model for Predicting LncRNA-Disease Associations
Qi Wang et al.
FRONTIERS IN GENETICS (2019)
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Zhen-Hao Guo et al.
ISCIENCE (2019)
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Juan Cheng et al.
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NCPCDA: network consistency projection for circRNA-disease association prediction
Guanghui Li et al.
RSC ADVANCES (2019)
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Qingfeng Chen et al.
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Xing Chen et al.
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Kai Zheng et al.
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GBDTCDA: Predicting circRNA-disease Associations Based on Gradient Boosting Decision Tree with Multiple Biological Data Fusion
Xiujuan Lei et al.
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Wen Zhang et al.
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Predicting MicroRNA-Disease Associations Based on Improved MicroRNA and Disease Similarities
Wei Lan et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2018)
exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes
Shengli Li et al.
NUCLEIC ACIDS RESEARCH (2018)
CSCD: a database for cancer-specific circular RNAs
Siyu Xia et al.
NUCLEIC ACIDS RESEARCH (2018)
Prediction of lncRNA-disease associations based on inductive matrix completion
Chengqian Lu et al.
BIOINFORMATICS (2018)
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function
Liang Cheng et al.
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DeepDTA: deep drug-target binding affinity prediction
Hakime Ozturk et al.
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Xing Chen et al.
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Identifying diseases-related metabolites using random walk
Yang Hu et al.
BMC BIOINFORMATICS (2018)
circRNA disease: a manually curated database of experimentally supported circRNA-disease associations
Zheng Zhao et al.
CELL DEATH & DISEASE (2018)
CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases
Chunyan Fan et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2018)
TLHNMDA: Triple Layer Heterogeneous Network Based Inference for MiRNA-Disease Association Prediction
Xing Chen et al.
FRONTIERS IN GENETICS (2018)
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Xing Chen et al.
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Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
Dongxia Yao et al.
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PWCDA: Path Weighted Method for Predicting circRNA-Disease Associations
Xiujuan Lei et al.
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Qiu Xiao et al.
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Yu-An Huang et al.
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LDAP: a web server for lncRNA-disease association prediction
Wei Lan et al.
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Ke-Ren Zhou et al.
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dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers
Zhen Yang et al.
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Janet Pinero et al.
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Wei Peng et al.
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Jiawei Luo et al.
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Jiawei Luo et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2017)
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Changlong Gu et al.
SCIENTIFIC REPORTS (2017)
PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction
Zhu-Hong You et al.
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miRmine: a database of human miRNA expression profiles
Bharat Panwar et al.
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SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions
Anindya Bhattacharya et al.
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deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
Ling-Ling Zheng et al.
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CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs
Dawood B. Dudekulay et al.
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Neighborhood Regularized Logistic Matrix Factorization for Drug-Target Interaction Prediction
Yong Liu et al.
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Gamage Upeksha Ganegoda et al.
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ExcellmiRDB for Translational Genomics: A Curated Online Resource for Extracellular MicroRNAs
Jitendra Kumar Barupal et al.
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Quan Zou et al.
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Xiu Cheng Quek et al.
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OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
Joanna S. Amberger et al.
NUCLEIC ACIDS RESEARCH (2015)
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Feng Tian et al.
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Joseph M. Dhahbi
AGEING RESEARCH REVIEWS (2014)
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Chuan Shi et al.
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Jie Sun et al.
MOLECULAR BIOSYSTEMS (2014)
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
Jun-Hao Li et al.
NUCLEIC ACIDS RESEARCH (2014)
circBase: a database for circular RNAs
Petar Glazar et al.
RNA (2014)
Human symptoms-disease network
XueZhong Zhou et al.
NATURE COMMUNICATIONS (2014)
miRCancer: a microRNA-cancer association database constructed by text mining on literature
Boya Xie et al.
BIOINFORMATICS (2013)
Novel human lncRNA-disease association inference based on lncRNA expression profiles
Xing Chen et al.
BIOINFORMATICS (2013)
Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits
Suman Ghosal et al.
Frontiers in Genetics (2013)
miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes
Qingqing Yang et al.
BIOINFORMATICS (2011)
Gaussian interaction profile kernels for predicting drug-target interaction
Twan van Laarhoven et al.
BIOINFORMATICS (2011)
Graph Regularized Nonnegative Matrix Factorization for Data Representation
Deng Cai et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2011)
miRWalk - Database: Prediction of possible miRNA binding sites by walking the genes of three genomes
Harsh Dweep et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2011)
Non-coding RNAs in human disease
Manel Esteller
NATURE REVIEWS GENETICS (2011)
Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
Dong Wang et al.
BIOINFORMATICS (2010)
Non-coding RNAs: regulators of disease
Ryan J. Taft et al.
JOURNAL OF PATHOLOGY (2010)
S-MED: Sarcoma microRNA Expression Database
Aaron L. Sarver et al.
LABORATORY INVESTIGATION (2010)
Solving the apparent diversity-accuracy dilemma of recommender systems
Tao Zhou et al.
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Andreas Ruepp et al.
GENOME BIOLOGY (2010)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
UCbase & miRfunc: a database of ultraconserved sequences and microRNA function
Cristian Taccioli et al.
NUCLEIC ACIDS RESEARCH (2009)
miR2Disease: a manually curated database for microRNA deregulation in human disease
Qinghua Jiang et al.
NUCLEIC ACIDS RESEARCH (2009)
Fast cross-validation algorithms for least squares support vector machine and kernel ridge regression
Senjian An et al.
PATTERN RECOGNITION (2007)
Non-coding RNA
JS Mattick et al.
HUMAN MOLECULAR GENETICS (2006)
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2006)
Towards Scaling Fully Personalized PageRank: Algorithms, Lower Bounds, and Experiments
Daniel Fogaras et al.
INTERNET MATHEMATICS (2005)
Non-coding RNA genes and the modern RNA world
SR Eddy
NATURE REVIEWS GENETICS (2001)