4.7 Article

PhyloCorrelate: inferring bacterial gene-gene functional associations through large-scale phylogenetic profiling

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

An assessment of genome annotation coverage across the bacterial tree of life

Briallen Lobb et al.

MICROBIAL GENOMICS (2020)

Article Biochemistry & Molecular Biology

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

Kerrin Mendler et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Evolutionary Biology

Phylogenetic Clustering of Genes Reveals Shared Evolutionary Trajectories and Putative Gene Functions

Chaoyue Liu et al.

GENOME BIOLOGY AND EVOLUTION (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Article Multidisciplinary Sciences

A most wanted list of conserved microbial protein families with no known domains

Stacia K. Wyman et al.

PLOS ONE (2018)

Article Multidisciplinary Sciences

PrePhyloPro: phylogenetic profile-based prediction of whole proteome linkages

Yulong Niu et al.

Article Biochemistry & Molecular Biology

Novel function discovery through sequence and structural data mining

Briallen Lobb et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)

Review Biochemistry & Molecular Biology

Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome

Gautam Dey et al.

CELL SYSTEMS (2015)

Article Biochemistry & Molecular Biology

STRING v10: protein-protein interaction networks, integrated over the tree of life

Damian Szklarczyk et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

FunCoup 3.0: database of genome-wide functional coupling networks

Thomas Schmitt et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

Genetic Co-Occurrence Network across Sequenced Microbes

Pan-Jun Kim et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

Miklos Csuroes

BIOINFORMATICS (2010)

Review Multidisciplinary Sciences

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution

Philip R. Kensche et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)

Article Biochemical Research Methods

An improved method for identifying functionally linked proteins using phylogenetic profiles

Shawn Cokus et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Completing the uric acid degradation pathway through phylogenetic comparison of whole genomes

I Ramazzina et al.

NATURE CHEMICAL BIOLOGY (2006)

Article Biochemical Research Methods

Predicting functional gene links from phylogenetic-statistical analyses of whole genomes

D Barker et al.

PLOS COMPUTATIONAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

A domain interaction map based on phylogenetic profiling

P Pagel et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences

M Huynen et al.

GENOME RESEARCH (2000)