相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Improving genomic prediction accuracy for meat tenderness in Nellore cattle using artificial neural networks
Fernando Brito Lopes et al.
JOURNAL OF ANIMAL BREEDING AND GENETICS (2020)
Sparse Convolutional Neural Networks for Genome-Wide Prediction
Patrik Waldmann et al.
FRONTIERS IN GENETICS (2020)
Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes
Rostam L. Abdollahi-Arpanahi et al.
GENETICS SELECTION EVOLUTION (2020)
Deep learning in omics: a survey and guideline
Zhiqiang Zhang et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2019)
Genome-wide association study identifies markers associated with meat ultimate pH in Duroc pigs
R. Davoli et al.
ANIMAL GENETICS (2019)
Multi-omics at single-cell resolution: comparison of experimental and data fusion approaches
Karolis Leonavicius et al.
CURRENT OPINION IN BIOTECHNOLOGY (2019)
A genome-wide single nucleotide polymorphism and copy number variation analysis for number of piglets born alive
Nedenia Bonvino Stafuzza et al.
BMC GENOMICS (2019)
Genetic correlation of fatty acid composition with growth, carcass, fat deposition and meat quality traits based on GWAS data in six pig populations
Yifeng Zhang et al.
MEAT SCIENCE (2019)
A Bayesian framework that integrates multi-omics data and gene networks predicts risk genes from schizophrenia GWAS data
Quan Wang et al.
NATURE NEUROSCIENCE (2019)
Bayes Factor-Based Regulatory Gene Network Analysis of Genome-Wide Association Study of Economic Traits in a Purebred Swine Population
Jungjae Lee et al.
GENES (2019)
Genome-Wide Association Study Reveals Candidate Genes for Growth Relevant Traits in Pigs
Zhenshuang Tang et al.
FRONTIERS IN GENETICS (2019)
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
Himel Mallick et al.
NATURE COMMUNICATIONS (2019)
QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice
Fan Lin et al.
G3-GENES GENOMES GENETICS (2019)
Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases
Anurag Priyann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
Hong-Kyu Choi
GENES & GENOMICS (2019)
A powerful method to integrate genotype and gene expression data for dissecting the genetic architecture of a disease
Sarmistha Das et al.
GENOMICS (2019)
Ensembl 2019
Fiona Cunningham et al.
NUCLEIC ACIDS RESEARCH (2019)
Genome Variation Map: a data repository of genome variations in BIG Data Center
Shuhui Song et al.
NUCLEIC ACIDS RESEARCH (2018)
A gene-phenotype relationship extraction pipeline from the biomedical literature using a representation learning approach
Wenhui Xing et al.
BIOINFORMATICS (2018)
Metagenomic analysis of microbial communities yields insight into impacts of nanoparticle design
Jacob W. Metch et al.
NATURE NANOTECHNOLOGY (2018)
DNA methylation-based biomarkers and the epigenetic clock theory of ageing
Steve Horvath et al.
NATURE REVIEWS GENETICS (2018)
RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments
Federico Zambelli et al.
NUCLEIC ACIDS RESEARCH (2018)
Integrated analysis of methylome, transcriptome and miRNAome of three pig breeds
Yuhua Fu et al.
EPIGENOMICS (2018)
Structural absorption by barbule microstructures of super black bird of paradise feathers
Dakota E. McCoy et al.
NATURE COMMUNICATIONS (2018)
Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize
Robert J. Schaefer et al.
PLANT CELL (2018)
Deep Learning-Based Multi-Omics Data Integration Reveals Two Prognostic Subtypes in High-Risk Neuroblastoma
Li Zhang et al.
FRONTIERS IN GENETICS (2018)
Deep learning for healthcare: review, opportunities and challenges
Riccardo Miotto et al.
BRIEFINGS IN BIOINFORMATICS (2018)
Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer
Kumardeep Chaudharyl et al.
CLINICAL CANCER RESEARCH (2018)
A genome-wide association study identifies genomic loci associated with backfat thickness, carcass weight, and body weight in two commercial pig populations
Yuanmei Guo et al.
JOURNAL OF APPLIED GENETICS (2017)
PigVar: a database of pig variations and positive selection signatures
Zhong-Yin Zhou et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2017)
More Is Better: Recent Progress in Multi-Omics Data Integration Methods
Sijia Huang et al.
Frontiers in Genetics (2017)
Multi-omics approaches to disease
Yehudit Hasin et al.
GENOME BIOLOGY (2017)
Pathway analysis of complex diseases for GWAS, extending to consider rare variants, multi-omics and interactions
Patrick Y. P. Kao et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2017)
Methods for the integration of multi-omics data: mathematical aspects
Matteo Bersanelli et al.
BMC BIOINFORMATICS (2016)
PCA-based polling strategy in machine learning framework for coronary artery disease risk assessment in intravascular ultrasound: A link between carotid and coronary grayscale plaque morphology
Tadashi Araki et al.
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE (2016)
Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets
Zhihong Zhu et al.
NATURE GENETICS (2016)
Predicting the Future - Big Data, Machine Learning, and Clinical Medicine
Ziad Obermeyer et al.
NEW ENGLAND JOURNAL OF MEDICINE (2016)
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
Alexandra Zhernakova et al.
SCIENCE (2016)
Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs
Nadezda Kryuchkova-Mostacci et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Expression Profiles of miRNA Subsets Distinguish Human Colorectal Carcinoma and Normal Colonic Mucosa
Daniel F. Pellatt et al.
CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY (2016)
The Time Is Right to Focus on Model Organism Metabolomes
Arthur S. Edison et al.
METABOLITES (2016)
QTLMiner: QTL database curation by mining tables in literature
Jing Peng et al.
BIOINFORMATICS (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing
Huashui Ai et al.
NATURE GENETICS (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The sequence read archive: explosive growth of sequencing data
Yuichi Kodama et al.
NUCLEIC ACIDS RESEARCH (2012)
Primer3-new capabilities and interfaces
Andreas Untergasser et al.
NUCLEIC ACIDS RESEARCH (2012)
Strong signatures of selection in the domestic pig genome
Carl-Johan Rubin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The European Nucleotide Archive
Rasko Leinonen et al.
NUCLEIC ACIDS RESEARCH (2011)
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Chen Xie et al.
NUCLEIC ACIDS RESEARCH (2011)
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Likun Wang et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Proteomics as a tool for the modelling of biological processes and biomarker development in nutrition research
Baukje de Roos et al.
BRITISH JOURNAL OF NUTRITION (2008)
Literature mining for the biologist: from information retrieval to biological discovery
LJ Jensen et al.
NATURE REVIEWS GENETICS (2006)
A QTL resource and comparison tool for pigs: PigQTLDB
ZL Hu et al.
MAMMALIAN GENOME (2005)
InterProScan: protein domains identifier
E Quevillon et al.
NUCLEIC ACIDS RESEARCH (2005)
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
R Edgar et al.
NUCLEIC ACIDS RESEARCH (2002)
dbSNP: the NCBI database of genetic variation
ST Sherry et al.
NUCLEIC ACIDS RESEARCH (2001)
The ARKdb: genome databases for farmed and other animals
J Hu et al.
NUCLEIC ACIDS RESEARCH (2001)