相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Capturing sequence diversity in metagenomes with comprehensive and scalable probe design
Hayden C. Metsky et al.
NATURE BIOTECHNOLOGY (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
Tommi Vatanen et al.
NATURE MICROBIOLOGY (2019)
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
Moran Yassour et al.
CELL HOST & MICROBE (2018)
Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales
Talia L. Karasov et al.
CELL HOST & MICROBE (2018)
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2′s q2-feature-classifier plugin
Nicholas A. Bokulich et al.
MICROBIOME (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
Long-term colonization exceeding six years from early infancy of Bifidobacterium longum subsp. longum in human gut
Kaihei Oki et al.
BMC MICROBIOLOGY (2018)
Temporal development of the gut microbiome in early childhood from the TEDDY study
Christopher J. Stewart et al.
NATURE (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
Francesco Asnicar et al.
MSYSTEMS (2017)
Age-Related Changes in the Composition of Gut Bifidobacterium Species
Kumiko Kato et al.
CURRENT MICROBIOLOGY (2017)
Genetic Determinants of the Gut Microbiome in UK Twins
Julia K. Goodrich et al.
CELL HOST & MICROBE (2016)
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach et al.
GENOME RESEARCH (2016)
The effect of host genetics on the gut microbiome
Marc Jan Bonder et al.
NATURE GENETICS (2016)
Association of host genome with intestinal microbial composition in a large healthy cohort
Williams Turpin et al.
NATURE GENETICS (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Cross-species comparisons of host genetic associations with the microbiome
Julia K. Goodrich et al.
SCIENCE (2016)
Bifidobacteria and Their Role as Members of the Human Gut Microbiota
Amy O'Callaghan et al.
FRONTIERS IN MICROBIOLOGY (2016)
Gut Bifidobacteria Populations in Human Health and Aging
Silvia Arboleya et al.
FRONTIERS IN MICROBIOLOGY (2016)
Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome
Hailiang Xie et al.
CELL SYSTEMS (2016)
Multiple comparative metagenomics using multiset k-mer counting
Gaetan Benoit et al.
PEERJ COMPUTER SCIENCE (2016)
Whole genome capture of vector-borne pathogens from mixed DNA samples: a case study of Borrelia burgdorferi
Giovanna Carpi et al.
BMC GENOMICS (2015)
Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum
Sabrina Duranti et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut
Christian Milani et al.
SCIENTIFIC REPORTS (2015)
Comparative Genomic Analysis of 45 Type Strains of the Genus Bifidobacterium: A Snapshot of Its Genetic Diversity and Evolution
Zhihong Sun et al.
PLOS ONE (2015)
Host genetic variation impacts microbiome composition across human body sites
Ran Blekhman et al.
GENOME BIOLOGY (2015)
Genetic Origins of Lactase Persistence and the Spread of Pastoralism in Africa
Alessia Ranciaro et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Snakemake-a scalable bioinformatics workflow engine
Johannes Koester et al.
BIOINFORMATICS (2012)
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
A worldwide correlation of lactase persistence phenotype and genotypes
Yuval Itan et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Exploring the Diversity of the Bifidobacterial Population in the Human Intestinal Tract
Francesca Turroni et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
The genome sequence of Bifidobacterium longum subsp infantis reveals adaptations for milk utilization within the infant microbiome
D. A. Sela et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Genomic regulatory blocks underlie extensive microsynteny conservation in insects
Par G. Engstrom et al.
GENOME RESEARCH (2007)
Genome-wide detection and characterization of positive selection in human populations
Pardis C. Sabeti et al.
NATURE (2007)
Convergent adaptation of human lactase persistence in Africa and Europe
Sarah A. Tishkoff et al.
NATURE GENETICS (2007)
The UK Adult Twin Registry (TwinsUK)
Tim D. Spector et al.
TWIN RESEARCH AND HUMAN GENETICS (2006)
分享论文
