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Lita M. Proctor et al.
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Evan Bolyen et al.
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Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
Alexandre Almeida et al.
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Nicholas A. Bokulich et al.
MICROBIOME (2018)
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David C. Emery et al.
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MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis
Joao F. Matias Rodrigues et al.
BIOINFORMATICS (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
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Monika Balvociute et al.
BMC GENOMICS (2017)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
An evaluation of the accuracy and speed of metagenome analysis tools
Stinus Lindgreen et al.
SCIENTIFIC REPORTS (2016)
The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
Aleksandar D. Kostic et al.
CELL HOST & MICROBE (2015)
Diversity and Evolution in the Genome of Clostridium difficile
Daniel R. Knight et al.
CLINICAL MICROBIOLOGY REVIEWS (2015)
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
Pablo R. Hardoim et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2015)
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy
Ayelet Sivan et al.
SCIENCE (2015)
The Earth Microbiome project: successes and aspirations
Jack A. Gilbert et al.
BMC BIOLOGY (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Structure and Functions of the Bacterial Microbiota of Plants
Davide Bulgarelli et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)
Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
Elaine Y. Hsiao et al.
CELL (2013)
Diversity and heritability of the maize rhizosphere microbiome under field conditions
Jason A. Peiffer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Evguenia Kopylova et al.
BIOINFORMATICS (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
Noah Fierer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill
Joel E. Kostka et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Soil bacterial and fungal communities across a pH gradient in an arable soil
Johannes Rousk et al.
ISME JOURNAL (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Direct sequencing of the human microbiome readily reveals community differences
Justin Kuczynski et al.
GENOME BIOLOGY (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
JE Clarridge
CLINICAL MICROBIOLOGY REVIEWS (2004)