4.7 Article

TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data

Davide Bolognini et al.

PLOS ONE (2019)

Review Genetics & Heredity

Long-Read Sequencing Emerging in Medical Genetics

Tuomo Mantere et al.

FRONTIERS IN GENETICS (2019)

Article Biochemical Research Methods

Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data

Robert S. Harris et al.

BIOINFORMATICS (2019)

Article Multidisciplinary Sciences

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Mark J. P. Chaisson et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing

Peter Edge et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Evolutionary and functional impact of common polymorphic inversions in the human genome

Carla Giner-Delgado et al.

NATURE COMMUNICATIONS (2019)

Article Biotechnology & Applied Microbiology

Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

Satomi Mitsuhashi et al.

GENOME BIOLOGY (2019)

Article Biochemical Research Methods

Versatile genome assembly evaluation with QUAST-LG

Alla Mikheenko et al.

BIOINFORMATICS (2018)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Review Genetics & Heredity

Tandem repeats mediating genetic plasticity in health and disease

Anthony J. Hannan

NATURE REVIEWS GENETICS (2018)

Article Biochemical Research Methods

Mosdepth: quick coverage calculation for genomes and exomes

Brent S. Pedersen et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Dirk D. Dolle et al.

GENOME RESEARCH (2017)

Article Biochemistry & Molecular Biology

Fast and accurate de novo genome assembly from long uncorrected reads

Robert Vaser et al.

GENOME RESEARCH (2017)

Article Biochemical Research Methods

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing

Koichiro Doi et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Resolving complex tandem repeats with long reads

Ajay Ummat et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles

Gareth Highnam et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

lobSTR: A short tandem repeat profiler for personal genomes

Melissa Gymrek et al.

GENOME RESEARCH (2012)

Article Engineering, Multidisciplinary

Shannon Entropy Analysis of the Genome Code

J. A. Tenreiro Machado

MATHEMATICAL PROBLEMS IN ENGINEERING (2012)

Article Genetics & Heredity

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

A. P. Jason de Koning et al.

PLOS GENETICS (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Microbiology

Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes

Guy-Franck Richard et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)

Article Biochemical Research Methods

Multiple sequence alignment using partial order graphs

C Lee et al.

BIOINFORMATICS (2002)