相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae
Zhenhua Liu et al.
NEW PHYTOLOGIST (2020)
Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
John P. Hamilton et al.
GIGASCIENCE (2020)
De novo sequencing of the Lavandula angustifolia genome reveals highly duplicated and optimized features for essential oil production
Radesh P. N. Malli et al.
PLANTA (2019)
A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways
Dongyan Zhao et al.
GIGASCIENCE (2019)
The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis
Qing Zhao et al.
MOLECULAR PLANT (2019)
A Comprehensive Survey on the Terpene Synthase Gene Family Provides New Insight into Its Evolutionary Patterns
Shu-Ye Jiang et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution
Guilherme T. Braz et al.
GENETICS (2018)
Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution
Guilherme T. Braz et al.
GENETICS (2018)
Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae
Benoit Boachon et al.
MOLECULAR PLANT (2018)
High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant
Ai-Xiang Dong et al.
GIGASCIENCE (2018)
Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data
Rubina Jibran et al.
HORTICULTURE RESEARCH (2018)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
A (-)-kolavenyl diphosphate synthase catalyzes the first step of salvinorin A biosynthesis in Salvia divinorum
Xiaoyue Chen et al.
JOURNAL OF EXPERIMENTAL BOTANY (2017)
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
Derek M. Bickhart et al.
NATURE GENETICS (2017)
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
Satria A. Kautsar et al.
NUCLEIC ACIDS RESEARCH (2017)
Biosynthesis of the psychotropic plant diterpene salvinorin A: Discovery and characterization of the Salvia divinorum clerodienyl diphosphate synthase
Kyle A. Pelot et al.
PLANT JOURNAL (2017)
The terpene synthase gene family in Tripterygium wilfordii harbors a labdane-type diterpene synthase among the monoterpene synthase TPS-b subfamily
Nikolaj L. Hansen et al.
PLANT JOURNAL (2017)
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Chia-Yi Cheng et al.
PLANT JOURNAL (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Expanding the Landscape of Diterpene Structural Diversity through Stereochemically Controlled Combinatorial Biosynthesis
Johan Andersen-Ranberg et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)
Analysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza
Haibin Xu et al.
MOLECULAR PLANT (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Plant metabolic clusters - from genetics to genomics
Hans-Wilhelm Nutzmann et al.
NEW PHYTOLOGIST (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
mixtools: AnRPackage for Analyzing Finite Mixture Models
Tatiana Benaglia et al.
Journal of Statistical Software (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
Michael S. Campbell et al.
PLANT PHYSIOLOGY (2014)
Manoyl Oxide (13R), the Biosynthetic Precursor of Forskolin, Is Synthesized in Specialized Root Cork Cells in Coleus forskohlii
Irini Pateraki et al.
PLANT PHYSIOLOGY (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
Plant P450s as versatile drivers for evolution of species-specific chemical diversity
Bjorn Hamberger et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
The Amborella Genome and the Evolution of Flowering Plants
Victor A. Albert et al.
SCIENCE (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
Michael S. Barker et al.
EVOLUTIONARY BIOINFORMATICS (2010)
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Matthew A. Campbell et al.
BMC GENOMICS (2006)
The maize An2 gene is induced by Fusarium attack and encodes an ent-copalyl diphosphate synthase
LJ Harris et al.
PLANT MOLECULAR BIOLOGY (2005)
Isolation and identification of mosquito bite deterrent terpenoids from leaves of American (Callicarpa americana) and Japanese (Callicarpa japonica) beautyberry
CL Cantrell et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)