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Kapil Saxena et al.
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Gaelle Noel et al.
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Julie In et al.
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Melinda A. Engevik et al.
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
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Fernando Ruiz-Perez et al.
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Jennifer Foulke-Abel et al.
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Nadia Boisen et al.
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Andreas Busch et al.
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Crystallization and initial crystallographic analysis of AafA: the major adhesive subunit of the enteroaggregative Escherichia coli AAF/II pilus
Yi Yang et al.
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Philipp Aurass et al.
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Malin E. V. Johansson et al.
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Iruka N. Okeke et al.
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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James K. Roche et al.
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The Sequence Alignment/Map format and SAMtools
Heng Li et al.
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Susan M. Harrington et al.
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Malin E. V. Johansson et al.
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Herbert L. DuPont et al.
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Marcus Mueller et al.
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Christine L. Hattrup et al.
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Mauricio J. Farfan et al.
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Common themes and variations in serine protease autotransporters
Yihfen T. Yen et al.
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Evolution of the chaperone/usher assembly pathway:: Fimbrial classification goes Greek
Sean-Paul Nuccio et al.
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DAF- and collagen-binding properties of chimeric Dr fimbriae
Beata Zalewska et al.
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Human intestinal tissue tropism in Escherichia coli O157: H7 -: initial colonization of terminal ileum and Peyer's patches and minimal colonic adhesion ex vivo
Yuwen Chong et al.
MICROBIOLOGY-SGM (2007)
Donor-strand exchange in chaperone-assisted pilus assembly proceeds through a concerted β strand displacement mechanism
Han Remaut et al.
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SM Harrington et al.
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SM Harrington et al.
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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
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PatchDock and SymmDock: servers for rigid and symmetric docking
D Schneidman-Duhovny et al.
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TV Nguyen et al.
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DB Huang et al.
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Printed covalent glycan array for ligand profiling of diverse glycan binding proteins
O Blixt et al.
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ZD Jiang et al.
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VK Mootha et al.
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MJ Henry-Stanley et al.
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LP Ménard et al.
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C Atuma et al.
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M Lyon et al.
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