4.8 Article

Flexible genes establish widespread bacteriophage pan-genomes in cryoconite hole ecosystems

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Robert A. Edwards et al.

NATURE MICROBIOLOGY (2019)

Article Virology

Single-Stranded DNA Viruses in Antarctic Cryoconite Holes

Pacifica Sommers et al.

VIRUSES-BASEL (2019)

Article Biochemistry & Molecular Biology

Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades

Anne Kupczok et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Review Biochemistry & Molecular Biology

Diversity-Generating Machines: Genetics of Bacterial Sugar-Coating

Rafal J. Mostowy et al.

TRENDS IN MICROBIOLOGY (2018)

Article Microbiology

Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes

Pacifica Sommers et al.

FEMS MICROBIOLOGY ECOLOGY (2018)

Article Multidisciplinary Sciences

Diel cycling and long-term persistence of viruses in the ocean's euphotic zone

Frank O. Aylward et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Editorial Material Respiratory System

Phage therapy is highly effective against chronic lung infections with Pseudomonas aeruginosa

Elaine M. Waters et al.

THORAX (2017)

Review Immunology

The Type IX Secretion System (T9SS): Highlights and Recent Insights into Its Structure and Function

Anna M. Lasica et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)

Review Biotechnology & Applied Microbiology

Bacteriophage-encoded virion-associated enzymes to overcome the carbohydrate barriers during the infection process

Agnieszka Latka et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

Intein Clustering Suggests Functional Importance in Different Domains of Life

Olga Novikova et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Microbiology

Flexible genomic islands as drivers of genome evolution

Francisco Rodriguez-Valera et al.

CURRENT OPINION IN MICROBIOLOGY (2016)

Article Microbiology

Genomic diversification of marine cyanophages into stable ecotypes

Marcia F. Marston et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Article Evolutionary Biology

Pangenome Evolution in the Marine Bacterium Alteromonas

Mario Lopez-Perez et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

VirSorter: mining viral signal from microbial genomic data

Simon Roux et al.

Review Microbiology

Prochlorococcus: the structure and function of collective diversity

Steven J. Biller et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Biochemical Research Methods

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

Jonathan Crabtree et al.

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

Bas E. Dutilh et al.

NATURE COMMUNICATIONS (2014)

Article Microbiology

Evidence for metaviromic islands in marine phages

Carolina Megumi Mizuno et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Biotechnology & Applied Microbiology

Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence

James Murphy et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Strong Seasonality and Interannual Recurrence in Marine Myovirus Communities

A. Pagarete et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Evolutionary Biology

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

Bhakti Dwivedi et al.

BMC EVOLUTIONARY BIOLOGY (2013)

Article Environmental Sciences

Viral impacts on bacterial communities in Arctic cryoconite

Christopher M. Bellas et al.

ENVIRONMENTAL RESEARCH LETTERS (2013)

Article Environmental Sciences

A metagenomic snapshot of taxonomic and functional diversity in an alpine glacier cryoconite ecosystem

Arwyn Edwards et al.

ENVIRONMENTAL RESEARCH LETTERS (2013)

Review Microbiology

Revenge of the phages: defeating bacterial defences

Julie E. Samson et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Environmental Sciences

Controls on the autochthonous production and respiration of organic matter in cryoconite holes on high Arctic glaciers

Jon Telling et al.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

A T3 and T7 Recombinant Phage Acquires Efficient Adsorption and a Broader Host Range

Tiao-Yin Lin et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Genomic island variability facilitates Prochlorococcus-virus coexistence

Sarit Avrani et al.

NATURE (2011)

Article Multidisciplinary Sciences

Mining Virulence Genes Using Metagenomics

Pedro Belda-Ferre et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Bacteria-Phage Antagonistic Coevolution in Soil

Pedro Gomez et al.

SCIENCE (2011)

Article Environmental Sciences

A simple and efficient method for concentration of ocean viruses by chemical flocculation

Seth G. John et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Antagonistic coevolution accelerates molecular evolution

Steve Paterson et al.

NATURE (2010)

Review Microbiology

Bacteriophage resistance mechanisms

Simon J. Labrie et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber

Lejla Pasic et al.

BMC GENOMICS (2009)

Article Microbiology

Genomic analysis of multiple Roseophage SIO1 strains

Florent Angly et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Review Multidisciplinary Sciences

Viruses manipulate the marine environment

Forest Rohwer et al.

NATURE (2009)

Review Microbiology

OPINION Explaining microbial population genomics through phage predation

Francisco Rodriguez-Valera et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Major viral impact on the functioning of benthic deep-sea ecosystems

Roberto Danovaro et al.

NATURE (2008)

Article Biochemical Research Methods

Identifying bacterial genes and endosymbiont DNA with Glimmer

Arthur L. Delcher et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

The marine viromes of four oceanic regions

Florent E. Angly et al.

PLOS BIOLOGY (2006)

Article Multidisciplinary Sciences

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome

H Tettelin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Multidisciplinary Sciences

Viruses in the sea

CA Suttle

NATURE (2005)

Review Biochemistry & Molecular Biology

Here a virus, there a virus, everywhere the same virus?

M Breitbart et al.

TRENDS IN MICROBIOLOGY (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

The PA14 domain, a conserved all-β domain in bacterial toxins, enzymes, adhesins and signaling molecules

DJ Rigden et al.

TRENDS IN BIOCHEMICAL SCIENCES (2004)

Review Biotechnology & Applied Microbiology

Glycosyltransferases encoded by viruses

N Markine-Goriaynoff et al.

JOURNAL OF GENERAL VIROLOGY (2004)

Article Ecology

Bacteriophages: Evolution of the majority

RW Hendrix

THEORETICAL POPULATION BIOLOGY (2002)

Article Biology

Antagonistic coevolution between a bacterium and a bacteriophage

A Buckling et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2002)