相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Growth of E. coli on formate and methanol via the reductive glycine pathway
Seohyoung Kim et al.
NATURE CHEMICAL BIOLOGY (2020)
Functional cooperation of the glycine synthase-reductase and Wood-Ljungdahl pathways for autotrophic growth of Clostridium drakei
Yoseb Song et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator
Stijn T. de Vries et al.
METABOLIC ENGINEERING (2020)
Core Catalysis of the Reductive Glycine Pathway Demonstrated in Yeast
Jorge Gonzalez de la Cruz et al.
ACS SYNTHETIC BIOLOGY (2019)
An in silico survey of Clostridioides difficile extrachromosomal elements
Bastian V. H. Hornung et al.
MICROBIAL GENOMICS (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway
Israel A. Figueroa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation
Charles A. R. Cotton et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium
Achim Mall et al.
SCIENCE (2018)
A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
Takuro Nunoura et al.
SCIENCE (2018)
The role of dynamic enzyme assemblies and substrate channelling in metabolic regulation
Lee J. Sweetlove et al.
NATURE COMMUNICATIONS (2018)
In Vivo Assimilation of One-Carbon via a Synthetic Reductive Glycine Pathway in Escherichia coli
Oren Yishai et al.
ACS SYNTHETIC BIOLOGY (2018)
Growth of Dehalococcoides mccartyi species in an autotrophic consortium producing limited acetate
Chang Ding et al.
BIODEGRADATION (2018)
The complex evolutionary history of aminoacyl-tRNA synthetases
Anargyros Chaliotis et al.
NUCLEIC ACIDS RESEARCH (2017)
Efficient reduction of CO2 by the molybdenum-containing formate dehydrogenase from Cupriavidus necator (Ralstonia eutropha)
Xuejun Yu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2017)
Metabolite Spectral Accuracy on Orbitraps
Xiaoyang Su et al.
ANALYTICAL CHEMISTRY (2017)
Proteomics Quality Control: Quality Control Software for MaxQuant Results
Chris Bielow et al.
JOURNAL OF PROTEOME RESEARCH (2016)
2016 update of the PRIDE database and its related tools
Juan Antonio Vizcaino et al.
NUCLEIC ACIDS RESEARCH (2016)
Pyruvate Formate-Lyase Enables Efficient Growth of Escherichia coli on Acetate and Formate
Lior Zelcbuch et al.
BIOCHEMISTRY (2016)
Reduction of Carbon Dioxide by a Molybdenum-Containing Formate Dehydrogenase: A Kinetic and Mechanistic Study
Luisa B. Maia et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)
Human Pancreatic Cancer Tumors Are Nutrient Poor and Tumor Cells Actively Scavenge Extracellular Protein
Jurre J. Kamphorst et al.
CANCER RESEARCH (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria
Kai Schuchmann et al.
NATURE REVIEWS MICROBIOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Clostridium acidurici Electron-Bifurcating Formate Dehydrogenase
Shuning Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes
Arren Bar-Even et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
The oxygen-tolerant and NAD+-dependent formate dehydrogenase from Rhodobacter capsulatus is able to catalyze the reduction of CO2 to formate
Tobias Hartmann et al.
FEBS JOURNAL (2013)
Database resources of the National Center for Biotechnology Information
Abigail Acland et al.
NUCLEIC ACIDS RESEARCH (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter et al.
NUCLEIC ACIDS RESEARCH (2012)
eQuilibrator-the biochemical thermodynamics calculator
Avi Flamholz et al.
NUCLEIC ACIDS RESEARCH (2012)
KEGG for integration and interpretation of large-scale molecular data sets
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2012)
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Yanbin Yin et al.
NUCLEIC ACIDS RESEARCH (2012)
The Emergence and Early Evolution of Biological Carbon-Fixation
Rogier Braakman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Isolation of sulfate-reducing bacteria from sediments above the deep-subseafloor aquifer
Katja Fichtel et al.
FRONTIERS IN MICROBIOLOGY (2012)
Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways
Ivan A. Berg
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Quality control and preprocessing of metagenomic datasets
Robert Schmieder et al.
BIOINFORMATICS (2011)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high- resolution mass spectrometry
Patrick Giavalisco et al.
PLANT JOURNAL (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence
Nuria Fonknechten et al.
BMC GENOMICS (2010)
Autotrophic carbon fixation in archaea
Ivan A. Berg et al.
NATURE REVIEWS MICROBIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Simultaneous Quantification of Metabolites Involved in Central Carbon and Energy Metabolism Using Reversed-Phase Liquid Chromatography-Mass Spectrometry and in Vitro 13C Labeling
Wen-Chu Yang et al.
ANALYTICAL CHEMISTRY (2008)
Syntrophic growth on formate: a new microbial niche in anoxic environments
Jan Dolfing et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
Elizabeth Pierce et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia
Goro Kikuchi et al.
PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2008)
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
Charles Bland et al.
BMC BIOINFORMATICS (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
D Laslett et al.
NUCLEIC ACIDS RESEARCH (2004)
Enzyme-specific profiles for genome annotation: PRIAM
C Claudel-Renard et al.
NUCLEIC ACIDS RESEARCH (2003)
Significance analysis of microarrays applied to the ionizing radiation response
VG Tusher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)