4.8 Article

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Fast and accurate long-read assembly with wtdbg2

Jue Ruan et al.

NATURE METHODS (2020)

Article Multidisciplinary Sciences

Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes

Yao-Ming Chang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biotechnology & Applied Microbiology

OrthoFinder: phylogenetic orthology inference for comparative genomics

David M. Emms et al.

GENOME BIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants

Xin Qiao et al.

GENOME BIOLOGY (2019)

Article Plant Sciences

Origin of angiosperms and the puzzle of the Jurassic gap

Hong-Tao Li et al.

NATURE PLANTS (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Review Biochemistry & Molecular Biology

Carotenoid Metabolism in Plants: The Role of Plastids

Tianhu Sun et al.

MOLECULAR PLANT (2018)

Article Multidisciplinary Sciences

Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality

Chaoling Wei et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biochemistry & Molecular Biology

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren et al.

GENOME RESEARCH (2017)

Article Plant Sciences

Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants

Pascal Schlapfer et al.

PLANT PHYSIOLOGY (2017)

Article Biochemistry & Molecular Biology

FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana

Frederic Bouche et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Plant Sciences

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

James W. Byng et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)

Article Biochemistry & Molecular Biology

Heatmapper: web-enabled heat mapping for all

Sasha Babicki et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Accurate identification of centromere locations in yeast genomes using Hi-C

Nelle Varoquaux et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biotechnology & Applied Microbiology

Characterizing and measuring bias in sequence data

Michael G. Ross et al.

GENOME BIOLOGY (2013)

Review Plant Sciences

Lessons from flower colour evolution on targets of selection

Carolyn A. Wessinger et al.

JOURNAL OF EXPERIMENTAL BOTANY (2012)

Article Biochemistry & Molecular Biology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Biochemical Research Methods

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt et al.

BMC BIOINFORMATICS (2011)

Review Plant Sciences

WRKY transcription factors

Paul J. Rushton et al.

TRENDS IN PLANT SCIENCE (2010)

Article Genetics & Heredity

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

Dapeng Wang et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2010)

Review Plant Sciences

POLYPLOIDY AND ANGIOSPERM DIVERSIFICATION

Douglas E. Soltis et al.

AMERICAN JOURNAL OF BOTANY (2009)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Horticulture

Comparison of flower color with anthocyanin composition patterns in evergreen azalea

Daiki Mizuta et al.

SCIENTIA HORTICULTURAE (2009)

Article Plant Sciences

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

Birgitta Bremer et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)

Review Genetics & Heredity

Turning a hobby into a job: How duplicated genes find new functions

Gavin C. Conant et al.

NATURE REVIEWS GENETICS (2008)

Review Plant Sciences

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

Yoshikazu Tanaka et al.

PLANT JOURNAL (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

RNAmmer:: consistent and rapid annotation of ribosomal RNA genes

Karin Lagesen et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

Mikita Suyama et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

CAFE: a computational tool for the study of gene family evolution

T De Bie et al.

BIOINFORMATICS (2006)

Review Plant Sciences

The genetics and biochemistry of floral pigments

Erich Grotewold

ANNUAL REVIEW OF PLANT BIOLOGY (2006)

Review Plant Sciences

MYB-bHLH-WD40 protein complex and the evolution of cellular diversity

NA Ramsay et al.

TRENDS IN PLANT SCIENCE (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

BLAT - The BLAST-like alignment tool

WJ Kent

GENOME RESEARCH (2002)