4.6 Article

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Combining genomics and epidemiology to track mumps virus transmission in the United States

Shirlee Wohl et al.

PLOS BIOLOGY (2020)

Article Genetics & Heredity

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data

Luca Ferretti et al.

Article Microbiology

Monitoring Viral Genetic Variation as a Tool To Improve Molecular Diagnostics for Mumps Virus

Meik Dilcher et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Systematic evaluation of error rates and causes in short samples in next-generation sequencing

Franziska Pfeiffer et al.

SCIENTIFIC REPORTS (2018)

Article Infectious Diseases

Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus

David J. King et al.

INFECTION GENETICS AND EVOLUTION (2016)

Article Biotechnology & Applied Microbiology

Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data

Richard J. Orton et al.

BMC GENOMICS (2015)

Article Multidisciplinary Sciences

Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic

Etienne Simon-Loriere et al.

NATURE (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

Tyler S. Alioto et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Challenges with Using Primer IDs to Improve Accuracy of Next Generation Sequencing

Johanna Brodin et al.

PLOS ONE (2015)

Article Biochemical Research Methods

Library preparation for highly accurate population sequencing of RNA viruses

Ashley Acevedo et al.

NATURE PROTOCOLS (2014)

Review Genetics & Heredity

The role of replicates for error mitigation in next-generation sequencing

Kimberly Robasky et al.

NATURE REVIEWS GENETICS (2014)

Review Biochemistry & Molecular Biology

The Next-Generation Sequencing Revolution and Its Impact on Genomics

Daniel C. Koboldt et al.

Article Biochemical Research Methods

The GEM mapper: fast, accurate and versatile alignment by filtration

Santiago Marco-Sola et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Quality control and preprocessing of metagenomic datasets

Robert Schmieder et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

Cassandra B. Jabara et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)