4.8 Article

Programmable cross-ribosome-binding sites to fine-tune the dynamic range of transcription factor-based biosensor

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Selene: a PyTorch-based deep learning library for sequence data

Kathleen M. Chen et al.

NATURE METHODS (2019)

Article Biochemical Research Methods

Development of Transcription Factor-Based Designer Macrolide Biosensors for Metabolic Engineering and Synthetic Biology

Christian M. Kasey et al.

ACS SYNTHETIC BIOLOGY (2018)

Review Biochemical Research Methods

Transcription Factor-Based Biosensors in High-Throughput Screening: Advances and Applications

Feng Cheng et al.

BIOTECHNOLOGY JOURNAL (2018)

Article Genetics & Heredity

Predicting the clinical impact of human mutation with deep neural networks

Laksshman Sundaram et al.

NATURE GENETICS (2018)

Article Biochemical Research Methods

Burden-driven feedback control of gene expression

Francesca Ceroni et al.

NATURE METHODS (2018)

Article Biochemistry & Molecular Biology

Improved sgRNA design in bacteria via genome-wide activity profiling

Jiahui Guo et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Layered dynamic regulation for improving metabolic pathway productivity in Escherichia coli

Stephanie J. Doong et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biochemical Research Methods

Exploring the Nonconserved Sequence Space of Synthetic Expression Modules in Bacillus subtilis

Christopher Sauer et al.

ACS SYNTHETIC BIOLOGY (2018)

Review Biochemical Research Methods

Transcription Factor-Based Biosensors in High-Throughput Screening: Advances and Applications

Feng Cheng et al.

BIOTECHNOLOGY JOURNAL (2018)

Article Multidisciplinary Sciences

Deep learning to predict the lab-of-origin of engineered DNA

Alec A. K. Nielsen et al.

NATURE COMMUNICATIONS (2018)

Article Biochemical Research Methods

A Genetically Encoded Biosensor for Monitoring Isoprene Production in Engineered Escherichia coli

Seong Keun Kim et al.

ACS SYNTHETIC BIOLOGY (2018)

Review Genetics & Heredity

Blueprints for Biosensors: Design, Limitations, and Applications

Alexander C. Carpenter et al.

Article Biotechnology & Applied Microbiology

Application of Transcription Factor-based 3-Hydroxypropionic Acid Biosensor

Nam Hoai Nguyen et al.

BIOTECHNOLOGY AND BIOPROCESS ENGINEERING (2018)

Article Biochemistry & Molecular Biology

Achieving large dynamic range control of gene expression with a compact RNA transcription-translation regulator

Alexandra M. Westbrook et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Engineering a riboswitch-based genetic platform for the self-directed evolution of acid-tolerant phenotypes

Hoang Long Pham et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

Obtaining a Panel of Cascade Promoter-5′-UTR Complexes in Escherichia coli

Shenghu Zhou et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Biochemical Research Methods

Single-step method for β-galactosidase assays in Escherichia coli using a 96-well microplate reader

Jorrit Schaefer et al.

ANALYTICAL BIOCHEMISTRY (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

Mette L. Skjoedt et al.

NATURE CHEMICAL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Role of mRNA structure in the control of protein folding

Guilhem Faure et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Genetically encoded sensors enable real-time observation of metabolite production

Jameson K. Rogers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Genetic circuit design automation

Alec A. K. Nielsen et al.

SCIENCE (2016)

Article Biotechnology & Applied Microbiology

Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System

Yu Jiang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Review Biochemical Research Methods

Novel screening methods - biosensors

Lothar Eggeling et al.

CURRENT OPINION IN BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

Predicting effects of noncoding variants with deep learning-based sequence model

Jian Zhou et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Amplification of small molecule-inducible gene expression via tuning of intracellular receptor densities

Baojun Wang et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Synthetic biosensors for precise gene control and real-time monitoring of metabolites

Jameson K. Rogers et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Evolution-guided optimization of biosynthetic pathways

Srivatsan Raman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Biochemistry & Molecular Biology

Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression

Alec A. K. Nielsen et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2013)

Article Biochemical Research Methods

Precise and reliable gene expression via standard transcription and translation initiation elements

Vivek K. Mutalik et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Quantifying Translational Coupling in E. coli Synthetic Operons Using RBS Modulation and Fluorescent Reporters

Ayelet Levin-Karp et al.

ACS SYNTHETIC BIOLOGY (2013)

Article Multidisciplinary Sciences

A sensing array of radically coupled genetic 'biopixels'

Arthur Prindle et al.

NATURE (2012)

Article Multidisciplinary Sciences

Genetic programs constructed from layered logic gates in single cells

Tae Seok Moon et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids

Fuzhong Zhang et al.

NATURE BIOTECHNOLOGY (2012)

Article Biotechnology & Applied Microbiology

The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters

Nicolas Seghezzi et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Review Biochemistry & Molecular Biology

Biosensors and their applications in microbial metabolic engineering

Fuzhong Zhang et al.

TRENDS IN MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology

Baojun Wang et al.

NATURE COMMUNICATIONS (2011)

Article Biotechnology & Applied Microbiology

Automated design of synthetic ribosome binding sites to control protein expression

Howard M. Salis et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Biotechnology & Applied Microbiology

The Performance of a Glass Bead Shaking Technique for the Disruption of Escherichia coli Cells

Ramakrishnan Nagasundara Ramanan et al.

BIOTECHNOLOGY AND BIOPROCESS ENGINEERING (2008)

Article Biotechnology & Applied Microbiology

Engineering and characterization of a superfolder green fluorescent protein

JD Pedelacq et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Directed evolution of substrate-optimized GroEL/S chaperonins

JD Wang et al.