4.7 Article

Adaptation, ancestral variation and gene flow in a 'Sky Island' Drosophila species

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The Genome of Drosophila innubila Reveals Lineage-Specific Patterns of Selection in Immune Genes

Tom Hill et al.

MOLECULAR BIOLOGY AND EVOLUTION (2019)

Article Biochemistry & Molecular Biology

Climate change, extinction, and Sky Island biogeography in a montane lizard

John J. Wiens et al.

MOLECULAR ECOLOGY (2019)

Article Evolutionary Biology

Balancing Selection Drives the Maintenance of Genetic Variation in Drosophila Antimicrobial Peptides

Joanne R. Chapman et al.

GENOME BIOLOGY AND EVOLUTION (2019)

Article Genetics & Heredity

Hidden genetic variation shapes the structure of functional elements in Drosophila

Mahul Chakraborty et al.

NATURE GENETICS (2018)

Article Biochemistry & Molecular Biology

Population structure and local selection yield high genomic variation in Mimulus guttatus

Joshua R. Puzey et al.

MOLECULAR ECOLOGY (2017)

Article Biochemistry & Molecular Biology

FlyBase at 25: looking to the future

L. Sian Gramates et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Genetics & Heredity

asymptoticMK: A Web-Based Tool for the Asymptotic McDonald-Kreitman Test

Benjamin C. Haller et al.

G3-GENES GENOMES GENETICS (2017)

Article Biochemistry & Molecular Biology

Detecting recent selective sweeps while controlling for mutation rate and background selection

Christian D. Huber et al.

MOLECULAR ECOLOGY (2016)

Article Biochemical Research Methods

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data

Vagheesh Narasimhan et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Genomic Evidence for Adaptive Inversion Clines in Drosophila melanogaster

Martin Kapun et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Biochemistry & Molecular Biology

Genomics of local adaptation with gene flow

Anna Tigano et al.

MOLECULAR ECOLOGY (2016)

Article Biochemistry & Molecular Biology

Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster

Heather E. Machado et al.

MOLECULAR ECOLOGY (2016)

Article Evolutionary Biology

Past climate change on Sky Islands drives novelty in a core developmental gene network and its phenotype

Marie-Julie Fave et al.

BMC EVOLUTIONARY BIOLOGY (2015)

Article Ecology

Seasonal variation in life history traits in two Drosophila species

E. L. Behrman et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2015)

Article Genetics & Heredity

Exploring population size changes using SNP frequency spectra

Xiaoming Liu et al.

NATURE GENETICS (2015)

Article Biochemistry & Molecular Biology

Numerous Transitions of Sex Chromosomes in Diptera

Beatriz Vicoso et al.

PLOS BIOLOGY (2015)

Article Biochemical Research Methods

ANGSD: Analysis of Next Generation Sequencing Data

Thorfinn Sand Korneliussen et al.

BMC BIOINFORMATICS (2014)

Review Zoology

On the adaptive benefits of mammal migration

T. Avgar et al.

CANADIAN JOURNAL OF ZOOLOGY (2014)

Article Genetics & Heredity

Fast and Efficient Estimation of Individual Ancestry Coefficients

Eric Frichot et al.

GENETICS (2014)

Review Biochemistry & Molecular Biology

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

Tami E. Cruickshank et al.

MOLECULAR ECOLOGY (2014)

Article Entomology

Beyond RNAi: Antiviral defense strategies in Drosophila and mosquito

Sarah H. Merkling et al.

JOURNAL OF INSECT PHYSIOLOGY (2013)

Article Biochemistry & Molecular Biology

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

Thomas A. White et al.

MOLECULAR ECOLOGY (2013)

Review Genetics & Heredity

Genomic signatures of selection at linked sites: unifying the disparity among species

Asher D. Cutter et al.

NATURE REVIEWS GENETICS (2013)

Article Multidisciplinary Sciences

Frequent adaptation and the McDonald-Kreitman test

Philipp W. Messer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Ecology

Population genomics of rapid adaptation by soft selective sweeps

Philipp W. Messer et al.

TRENDS IN ECOLOGY & EVOLUTION (2013)

Article Biochemical Research Methods

DELLY: structural variant discovery by integrated paired-end and split-read analysis

Tobias Rausch et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

The Drosophila melanogaster Genetic Reference Panel

Trudy F. C. Mackay et al.

NATURE (2012)

Article Biochemical Research Methods

SnIPRE: Selection Inference Using a Poisson Random Effects Model

Kirsten E. Eilertson et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Estimation of the Neutrality Index

Nina Stoletzki et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Multidisciplinary Sciences

Inference of human population history from individual whole-genome sequences

Heng Li et al.

NATURE (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Plant Sciences

Onset of summer flowering in a 'Sky Island' is driven by monsoon moisture

Theresa M. Crimmins et al.

NEW PHYTOLOGIST (2011)

Article Multidisciplinary Sciences

A DNA Virus of Drosophila

Robert L. Unckless

PLOS ONE (2011)

Review Ecology

Genetic Consequences of Range Expansions

Laurent Excoffier et al.

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biology

The Celtic fringe of Britain: insights from small mammal phylogeography

Jeremy B. Searle et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Review Genetics & Heredity

Pervasive Natural Selection in the Drosophila Genome?

Guy Sella et al.

PLOS GENETICS (2009)

Article Ecology

No resistance to male-killing Wolbachia after thousands of years of infection

J. Jaenike et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2008)

Article Multidisciplinary Sciences

Attributing physical and biological impacts to anthropogenic climate change

Cynthia Rosenzweig et al.

NATURE (2008)

Review Microbiology

Wolbachia: master manipulators of invertebrate biology

John H. Werren et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus

Mar Marzo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Genetics & Heredity

The structure of linkage disequilibrium around a selective sweep

Gil McVean

GENETICS (2007)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Molecular evidence for glacial refugia of mountain plants in the European Alps

P Schönswetter et al.

MOLECULAR ECOLOGY (2005)

Article Biochemistry & Molecular Biology

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

G Evanno et al.

MOLECULAR ECOLOGY (2005)

Article Multidisciplinary Sciences

The Toll pathway is important for an antiviral response in Drosophila

RA Zambon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Genetic variability and phylogeography of the invasive zebra mussel, Dreissena polymorpha (Pallas)

I Astanei et al.

MOLECULAR ECOLOGY (2005)

Article Evolutionary Biology

Subfunctionalization of duplicated genes as a transition state to neofunctionalization

S Rastogi et al.

BMC EVOLUTIONARY BIOLOGY (2005)

Review Genetics & Heredity

Molecular signatures of natural selection

R Nielsen

ANNUAL REVIEW OF GENETICS (2005)

Review Immunology

Toll-like receptors in innate immunity

K Takeda et al.

INTERNATIONAL IMMUNOLOGY (2005)

Article Biochemistry & Molecular Biology

Disentangling the effects of demography and selection in human history

JE Stajich et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Review Multidisciplinary Sciences

The immune response of Drosophila

JA Hoffmann

NATURE (2003)

Article Biochemistry & Molecular Biology

Subdivision and haplotype structure in natural populations of Arabidopsis lyrata

SI Wright et al.

MOLECULAR ECOLOGY (2003)

Article Multidisciplinary Sciences

A globally coherent fingerprint of climate change impacts across natural systems

C Parmesan et al.

NATURE (2003)

Review Geography, Physical

Persistent millennial-scale climatic variability over the past 25,000 years in Southern Africa

K Holmgren et al.

QUATERNARY SCIENCE REVIEWS (2003)

Article Multidisciplinary Sciences

Adaptive protein evolution in Drosophila

NGC Smith et al.

NATURE (2002)

Review Genetics & Heredity

The evolution and genetics of innate immunity

DA Kimbrell et al.

NATURE REVIEWS GENETICS (2001)

Review Multidisciplinary Sciences

The genetic legacy of the Quaternary ice ages

G Hewitt

NATURE (2000)