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Alice Barkan et al.
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Yu-Chan Zhang et al.
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Omar Darwish et al.
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Carla A. Klattenhoff et al.
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Stephane E. Castel et al.
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He Li et al.
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Xiangbin Xu et al.
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
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Novel classes of non-coding RNAs and cancer
Jiri Sana et al.
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Jun Liu et al.
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Flower and early fruit development in a diploid strawberry, Fragaria vesca
Courtney A. Hollender et al.
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Susan Boerner et al.
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Jihua Ding et al.
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Mitchell Guttman et al.
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The genome of woodland strawberry (Fragaria vesca)
Vladimir Shulaev et al.
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Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
Jae Bok Heo et al.
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BEDTools: a flexible suite of utilities for comparing genomic features
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Long Noncoding RNAs with Enhancer-like Function in Human Cells
Ulf Andersson Orom et al.
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Maite Huarte et al.
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Delphine Bernard et al.
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Cole Trapnell et al.
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Sophie Redon et al.
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A Transcript Accounting from Diverse Tissues of a Cultivated Strawberry
Kevin M. Folta et al.
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Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
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Janet P. Slovin et al.
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Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
Ana C. Marques et al.
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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Next-Generation DNA Sequencing Methods
Elaine R. Mardis
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WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
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Target mimicry provides a new mechanism for regulation of microRNA activity
Jose Manuel Franco-Zorrilla et al.
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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
Lei Kong et al.
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John L. Rinn et al.
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High-efficiency transformation of the diploid strawberry (Fragaria vesca) for functional genomics
T Oosumi et al.
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De novo identification of repeat families in large genomes
AL Price et al.
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Empirical analysis of transcriptional activity in the Arabidopsis genome
K Yamada et al.
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Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status
J Wasaki et al.
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Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis
AC Martín et al.
PLANT JOURNAL (2000)