4.6 Review

Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory

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Weissella beninensis sp. nov., a motile lactic acid bacterium from submerged cassava fermentations, and emended description of the genus Weissella

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Vagococcus penaei sp. nov., isolated from spoilage microbiota of cooked shrimp (Penaeus vannamei)

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Holger C. Scholz et al.

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Hafnia paralvei sp nov., formerly known as Hafnia alvei hybridization group 2

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Staphylococcus massiliensis sp nov., isolated from a human brain abscess

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Kocuria atrinae sp nov., isolated from traditional Korean fermented seafood

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Pseudoclavibacter chungangensis sp nov., isolated from activated sludge

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Streptococcus merionis sp nov., isolated from Mongolian jirds (Meriones unguiculatus)

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Robinsoniella peoriensis gen. nov., sp nov., isolated from a swine-manure storage pit and a human clinical source

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Paraoerskovia marina gen. nov., sp nov., an actinobacterium isolated from marine sediment

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Campylobacter avium sp nov., a hippurate-positive species isolated from poultry

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Leptospira kmetyi sp nov., isolated from an environmental source in Malaysia

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Streptococcus henryi sp nov and Streptococcus caballi sp nov., isolated from the hindgut of horses with oligofructose-induced laminitis

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Lactococcus chungangensis sp nov., a lactic acid bacterium isolated from activated sludge foam

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Pediococcus argentinicus sp nov from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis

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Acidovorax caeni sp nov., a denitrifying species with genetically diverse isolates from activated sludge

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Knoellia aerolata sp nov., isolated from an air sample in Korea

Hang-Yeon Weon et al.

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Brachybacterium zhongshanense sp nov., a cellulose-decomposing bacterium from sediment along the Qijiang River, Zhongshan City, China

Guoxia Zhang et al.

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Cellulosimicrobium terreum sp nov., isolated from soil

Jung-Hoon Yoon et al.

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Dolosigranulum pigrum causing nosocomial pneumonia and septicemia

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Cellulomonas composti sp nov., a cellulolytic bacterium isolated from cattle farm compost

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Janibacter corallicola sp nov., isolated from coral in Palau

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Vagococcus elongatus sp nov, isolated from a swine-manure storage pit

Paul A. Lawson et al.

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Suitability of partial 16S ribosomal RNA gene sequence analysis for the identification of dangerous bacterial pathogens

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Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies

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dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus

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Aerococcus suis sp nov., isolated from clinical specimens from swine

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Magnetic particles for the separation and purification of nucleic acids

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16S rRNA sequencing in routine bacterial identification: A 30-month experiment

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Dermacoccus barathri sp nov and Dermacoccus profundi sp nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench

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First report of bacteremia by Asaia bogorensis, in a patient with a history of intravenous-drug abuse

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Kocuria himachalensis sp nov., an actinobacterium isolated from the Indian Himalayas

S. Mayilraj et al.

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Enterococcus caccae sp nov., isolated from human stools

Maria da Gloria S. Carvalho et al.

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Dermacoccus abyssi sp nov., a piezotolerant actinomycete isolated from the Mariana Trench

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Genetic relatedness within the genus Campylobacter inferred from rpoB sequences

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Streptococcus massiliensis sp nov., isolated from a patient blood culture

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Kocuria aegyptia sp nov., a novel actinobacterium isolated from a saline, alkaline desert soil in Egypt

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Clinical and laboratory features of the Nocardia spp. based on current molecular taxonomy

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Pediococcus cellicola sp nov., a novel lactic acid coccus isolated from a distilled-spirit-fermenting cellar

B Zhang et al.

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Staphylococcus simiae sp nov., isolated from South American squirrel monkeys

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Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase β-subunit

S Paradis et al.

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Bacteremia caused by an undescribed species of Janibacter

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Six novel Arthrobacter species isolated from deteriorated mural paintings

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Pseudomonas argentinensis sp nov., a novel yellow pigment-producing bacterial species, isolated from rhizospheric soil in Cordoba, Argentina

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First description of Curtobacterium spp. isolated from human clinical specimens

G Funke et al.

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16S-23S rRNA gene internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Porphyromonas

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Nomenclature and taxonomy of the genus Salmonella

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

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Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp nov.

L Tvrzova et al.

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Advenella incenata gen. nov., sp nov., a novel member of the Alcaligenaceae, isolated from various clinical samples

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Taxonomy of the genus Cupriavidus:: a tale of lost and found

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Recommendations for treatment of human infections caused by Bartonella species

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Identification and distribution of insertion sequences of Paracoccus solventivorans

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Review and re-analysis of domain-specific 16S primers

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Diversity and significance of Burkholderia species occupying diverse ecological niches

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Corynebacterium sphenisci sp nov., isolated from wild penguins

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

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Multiple sequence alignment with the Clustal series of programs

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Bacteremia caused by a novel species of Sphingobacterium

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rpoB gene sequence-based identification of Staphylococcus species

M Drancourt et al.

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Knoellia sinensis gen. nov., sp nov and Knoellia subterranea sp nov., two novel actinobacteria isolated from a cave

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)

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Streptococcus entericus sp nov., isolated from cattle intestine

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2002)

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Facklamia miroungae sp nov., from a juvenile southern elephant seal (Mirounga leonina)

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)

Article Biochemical Research Methods

Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting

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JOURNAL OF MICROBIOLOGICAL METHODS (2001)

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Aerococcus urinaehominis sp nov., isolated from human urine

PA Lawson et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)

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Use of rpoB gene analysis for detection and identification of Bartonella species

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A simple and sensitive method to extract bacterial, yeast and fungal DNA from blood culture material

BC Miller et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2000)

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Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics

GM Pupo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

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Emendation of Pseudomonas straminea Iizuka and Komagata 1963

M Uchino et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)

Article Microbiology

Phylogenetic analysis of the genus Thermoactinomyces based on 16S rDNA sequences

JH Yoon et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)

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Vagococcus fessus sp nov., isolated from a seal and a harbour porpoise

L Hoyles et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)

Article Microbiology

Classification of Proteus vulgaris biogroup 3 with recognition of Proteus hauseri sp nov., nom. rev. and unnamed Proteus genomospecies 4, 5 and 6

CM O'Hara et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)

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Leuconostoc kimchii sp nov., a new species from kimchi

J Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)