4.7 Article

Distinctive gene and protein characteristics of extremely piezophilic Colwellia

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Microbiology

Alanine dehydrogenases in mycobacteria

Ji-A Jeong et al.

JOURNAL OF MICROBIOLOGY (2019)

Article Microbiology

Microbial Community Diversity Within Sediments From Two Geographically Separated Hadal Trenches

Logan M. Peoples et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Multidisciplinary Sciences

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean

Dominique Boeuf et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Oceanography

A full-ocean-depth rated modular lander and pressure-retaining sampler capable of collecting hadal-endemic microbes under in situ conditions

Logan M. Peoples et al.

DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2019)

Article Microbiology

A conserved tad pilus promotes Vibrio vulnificus oyster colonization

Meng Pu et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Environmental Sciences

Low-temperature chemotaxis, halotaxis and chemohalotaxis by the psychrophilic marine bacterium Colwellia psychrerythraea 34H

G. M. Showalter et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2018)

Article Multidisciplinary Sciences

Vertically distinct microbial communities in the Mariana and Kermadec trenches

Logan M. Peoples et al.

PLOS ONE (2018)

Article Multidisciplinary Sciences

Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments

Nina Dombrowski et al.

NATURE COMMUNICATIONS (2018)

Article Biochemical Research Methods

Phandango: an interactive viewer for bacterial population genomics

James Hadfield et al.

BIOINFORMATICS (2018)

Article Microbiology

Colwellia marinimaniae sp nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench

Masataka Kusube et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

Claire Bertelli et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders

Ping Hu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

Maria G. Pachiadaki et al.

SCIENCE (2017)

Article Microbiology

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

Imchang Lee et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

High hydrostatic pressure adaptive strategies in an obligate piezophile Pyrococcus yayanosii

Gregoire Michoud et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm

Daniel M. de Brito et al.

PLOS ONE (2016)

Article Multidisciplinary Sciences

Identification of protein secretion systems in bacterial genomes

Sophie S. Abby et al.

SCIENTIFIC REPORTS (2016)

Article Environmental Sciences

Colwellia psychrerythraea Strains from Distant Deep Sea Basins Show Adaptation to Local Conditions

Stephen M. Techtmann et al.

FRONTIERS IN ENVIRONMENTAL SCIENCE (2016)

Article Biotechnology & Applied Microbiology

Single Cells within the Puerto Rico Trench Suggest Hadal Adaptation of Microbial Lineages

Rosa Leon-Zayas et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Review Biochemistry & Molecular Biology

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes

Mohamed Jebbar et al.

EXTREMOPHILES (2015)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

Sara Kleindienst et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Microbiology

An abyssal mobilome: viruses, plasmids and vesicles from deep-sea hydrothermal vents

Julien Lossouarn et al.

RESEARCH IN MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

Dilution limits dissolved organic carbon utilization in the deep ocean

Jesus M. Arrieta et al.

SCIENCE (2015)

Article Microbiology

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

Kristina M. Fontanez et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

VirSorter: mining viral signal from microbial genomic data

Simon Roux et al.

Article Biochemical Research Methods

Kablammo: an interactive, web-based BLAST results visualizer

Jeff A. Wintersinger et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Ecology

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

J. Cameron Thrash et al.

ISME JOURNAL (2014)

Article Biochemistry & Molecular Biology

IMG 4 version of the integrated microbial genomes comparative analysis system

Victor M. Markowitz et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Ecotype Diversity and Conversion in Photobacterium profundum Strains

Federico M. Lauro et al.

PLOS ONE (2014)

Article Multidisciplinary Sciences

Marine fish may be biochemically constrained from inhabiting the deepest ocean depths

Paul H. Yancey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions

Jesse R. Colangelo-Lillis et al.

EXTREMOPHILES (2013)

Article Biochemical Research Methods

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

The Respiratory System of the Piezophile Photobacterium profundum SS9 Grown under Various Pressures

Hideyuki Tamegai et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Review Microbiology

Extreme genome reduction in symbiotic bacteria

John P. McCutcheon et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

ExPASy: SIB bioinformatics resource portal

Panu Artimo et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Yanbin Yin et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

Molly C. Redmond et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biotechnology & Applied Microbiology

A genomic island provides Acidithiobacillus ferrooxidans ATCC 53993 additional copper resistance: a possible competitive advantage

Luis H. Orellana et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Going Deeper: Metagenome of a Hadopelagic Microbial Community

Emiley A. Eloe et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

Brandon K. Swan et al.

SCIENCE (2011)

Article Microbiology

Is the genetic landscape of the deep subsurface biosphere affected by viruses?

Rika E. Anderson et al.

FRONTIERS IN MICROBIOLOGY (2011)

Article Biochemical Research Methods

genoPlotR: comparative gene and genome visualization in R

Lionel Guy et al.

BIOINFORMATICS (2010)

Review Microbiology

The many ways of coping with pressure

Philippe M. Oger et al.

RESEARCH IN MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

Konstantinos T. Konstantinidis et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions

Emiley A. Eloe et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Review Biochemical Research Methods

Recent developments in the MAFFT multiple sequence alignment program

Kazutaka Katoh et al.

BRIEFINGS IN BIOINFORMATICS (2008)

Review Biochemistry & Molecular Biology

Prokaryotic lifestyles in deep sea habitats

Federico M. Lauro et al.

EXTREMOPHILES (2008)

Article Multidisciplinary Sciences

Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat

Ana-Belen Martin-Cuadrado et al.

PLOS ONE (2007)

Article Biotechnology & Applied Microbiology

The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms

Joanna Kiraga et al.

BMC GENOMICS (2007)

Review Microbiology

The tad locus:: postcards from the widespread colonization island

Mladen Tomich et al.

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation

Federico M. Lauro et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Piezophilic adaptation: a genomic point of view

Francesca Simonato et al.

JOURNAL OF BIOTECHNOLOGY (2006)

Article Multidisciplinary Sciences

Community genomics among stratified microbial assemblages in the ocean's interior

EF DeLong et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

BA Methé et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Microbiology

Colwellia piezophila sp nov., a novel piezophilic species from deep-sea sediments of the Japan Trench

Y Nogi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Article Genetics & Heredity

The widespread colonization island of Actinobacillus actinomycetemcomitans

PJ Planet et al.

NATURE GENETICS (2003)

Article Biochemistry & Molecular Biology

Protein adaptations to temperature and pressure: complementary roles of adaptive changes in amino acid sequence and internal milieu

GN Somero

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Solute accumulation in the deep-sea bacterium Photobacterium profundum

DD Martin et al.

EXTREMOPHILES (2002)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)