4.6 Article Proceedings Paper

DeeplyEssential: a deep neural network for predicting essential genes in microbes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Identifying Bacterial Essential Genes Based on a Feature-Integrated Method

Yan Lin et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

HumanNet v2: human gene networks for disease research

Sohyun Hwang et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Network-based features enable prediction of essential genes across diverse organisms

Karthik Azhagesan et al.

PLOS ONE (2018)

Article Biochemistry & Molecular Biology

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

Damian Szklarczyk et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Gene essentiality prediction based on fractal features and machine learning

Yongming Yu et al.

MOLECULAR BIOSYSTEMS (2017)

Article Biochemical Research Methods

Maximum entropy methods for extracting the learned features of deep neural networks

Alex Finnegan et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemical Research Methods

Sequence-based information-theoretic features for gene essentiality prediction

Dawit Nigatu et al.

BMC BIOINFORMATICS (2017)

Article Biochemical Research Methods

Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters

Yifeng Li et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2016)

Review Computer Science, Artificial Intelligence

Deep learning in neural networks: An overview

Juergen Schmidhuber

NEURAL NETWORKS (2015)

Proceedings Paper Computer Science, Software Engineering

An Empirical Study on Preprocessing High-dimensional Class-imbalanced Data for Classification

Hua Yin et al.

2015 IEEE 17TH INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING AND COMMUNICATIONS, 2015 IEEE 7TH INTERNATIONAL SYMPOSIUM ON CYBERSPACE SAFETY AND SECURITY, AND 2015 IEEE 12TH INTERNATIONAL CONFERENCE ON EMBEDDED SOFTWARE AND SYSTEMS (ICESS) (2015)

Article Biochemical Research Methods

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity

Noel Malod-Dognin et al.

BIOINFORMATICS (2014)

Article Biology

Predicting essential genes for identifying potential drug targets in Aspergillus fumigatus

Yao Lu et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Predicting bacterial essential genes using only sequence composition information

L. W. Ning et al.

GENETICS AND MOLECULAR RESEARCH (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Training Set Selection for the Prediction of Essential Genes

Jian Cheng et al.

PLOS ONE (2014)

Article Biotechnology & Applied Microbiology

A new computational strategy for predicting essential genes

Jian Cheng et al.

BMC GENOMICS (2013)

Article Biotechnology & Applied Microbiology

CEG: a database of essential gene clusters

Yuan-Nong Ye et al.

BMC GENOMICS (2013)

Article Biochemistry & Molecular Biology

OGEE: an online gene essentiality database

Wei-Hua Chen et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biotechnology & Applied Microbiology

Essential genes as antimicrobial targets and cornerstones of synthetic biology

Mario Juhas et al.

TRENDS IN BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

Jingyuan Deng et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Cell Biology

Essence of life: essential genes of minimal genomes

Mario Juhas et al.

TRENDS IN CELL BIOLOGY (2011)

Article Multidisciplinary Sciences

Putative essential and core-essential genes in Mycoplasma genomes

Yan Lin et al.

SCIENTIFIC REPORTS (2011)

Article Mathematical & Computational Biology

Identifying essential genes in bacterial metabolic networks with machine learning methods

Kitiporn Plaimas et al.

BMC SYSTEMS BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Targeting virulence: a new paradigm for antimicrobial therapy

Anne E. Clatworthy et al.

NATURE CHEMICAL BIOLOGY (2007)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

The PROSITE database

Nicolas Hulo et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Cell Biology

Genome-wide screening for gene function using RNAi in mammalian cells

LM Cullen et al.

IMMUNOLOGY AND CELL BIOLOGY (2005)

Article Microbiology

Global transposon mutagenesis and essential gene analysis of Helicobacter pylori

NR Salama et al.

JOURNAL OF BACTERIOLOGY (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Review Microbiology

Comparative genomics, minimal gene-sets and the last universal common ancestor

EV Koonin

NATURE REVIEWS MICROBIOLOGY (2003)

Article Multidisciplinary Sciences

Functional profiling of the Saccharomyces cerevisiae genome

G Giaever et al.

NATURE (2002)