相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome-Wide Association Study (GWAS) for Mesocotyl Elongation in Rice (Oryza sativa L.) under Multiple Culture Conditions
Hongyan Liu et al.
GENES (2020)
Whole Genome Scan Reveals Molecular Signatures of Divergence and Selection Related to Important Traits in Durum Wheat Germplasm
Francesca Taranto et al.
FRONTIERS IN GENETICS (2020)
PINOID Is Required for Formation of the Stigma and Style in Rice
Yubing He et al.
PLANT PHYSIOLOGY (2019)
Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses
Zhenchang Liang et al.
NATURE COMMUNICATIONS (2019)
Empirical evaluation of variant calling accuracy using ultra-deep whole-genome sequencing data
Toshihiro Kishikawa et al.
SCIENTIFIC REPORTS (2019)
Comparative population genomics identified genomic regions and candidate genes associated with fruit domestication traits in peach
Ke Cao et al.
PLANT BIOTECHNOLOGY JOURNAL (2019)
Generating High Density, Low Cost Genotype Data in Soybean [Glycine max (L.) Merr.]
Mary M. Happ et al.
G3-GENES GENOMES GENETICS (2019)
A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources
Benoit Darrier et al.
FRONTIERS IN PLANT SCIENCE (2019)
Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites
Vincenza Colonna et al.
SCIENTIFIC REPORTS (2019)
Confounding of linkage disequilibrium patterns in large scale DNA based gene-gene interaction studies
Marc Joiret et al.
BIODATA MINING (2019)
Genotyping by Sequencing of Cultivated Lentil (Lens culinaris Medik.) Highlights Population Structure in the Mediterranean Gene Pool Associated With Geographic Patterns and Phenotypic Variables
Stefano Pavan et al.
FRONTIERS IN GENETICS (2019)
Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits
Shaogui Guo et al.
NATURE GENETICS (2019)
Crop genome-wide association study: a harvest of biological relevance
Hai-Jun Liu et al.
PLANT JOURNAL (2019)
Evidence for Strong Kinship Influence on the Extent of Linkage Disequilibrium in Cultivated Common Beans
Augusto Lima Diniz et al.
GENES (2019)
Genome-Wide Association Studies in Apple Reveal Loci for Aroma Volatiles, Sugar Composition, and Harvest Date
Bjarne Larsen et al.
PLANT GENOME (2019)
Genetic variations in plant architecture traits in cotton (Gossypium hirsutum) revealed by a genome-wide association study
Tianwang Wen et al.
CROP JOURNAL (2019)
A tutorial on conducting genome-wide association studies: Quality control and statistical analysis
Andries T. Marees et al.
INTERNATIONAL JOURNAL OF METHODS IN PSYCHIATRIC RESEARCH (2018)
Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits
Xiongming Du et al.
NATURE GENETICS (2018)
Genome-Wide Association Studies of 11 Agronomic Traits in Cassava (Manihot esculenta Crantz)
Shengkui Zhang et al.
FRONTIERS IN PLANT SCIENCE (2018)
Tools for Genetic Studies in Experimental Populations of Polyploids
Peter M. Bourke et al.
FRONTIERS IN PLANT SCIENCE (2018)
Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array
Qian You et al.
FRONTIERS IN PLANT SCIENCE (2018)
Genotyping-by-sequencing highlights patterns of genetic structure and domestication in artichoke and cardoon
Stefano Pavan et al.
PLOS ONE (2018)
GBS-derived SNP catalogue unveiled wide genetic variability and geographical relationships of Italian olive cultivars
Nunzio D'Agostino et al.
SCIENTIFIC REPORTS (2018)
Genome-Wide Association Studies Reveal Genetic Variation and Candidate Genes of Drought Stress Related Traits in Cotton (Gossypium hirsutum L.)
Sen Hou et al.
FRONTIERS IN PLANT SCIENCE (2018)
GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers
Ruixian Liu et al.
FRONTIERS IN PLANT SCIENCE (2018)
The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development
Xin Wang et al.
HORTICULTURE RESEARCH (2018)
Carotenoid Presence Is Associated with the Or Gene in Domesticated Carrot
Shelby L. Ellison et al.
GENETICS (2018)
Genome re-sequencing reveals the evolutionary history of peach fruit edibility
Yang Yu et al.
NATURE COMMUNICATIONS (2018)
Genome-Wide Association Study Identifies Candidate Genes Related to Seed Oil Composition and Protein Content in Gossypium hirsutum L.
Yanchao Yuan et al.
FRONTIERS IN PLANT SCIENCE (2018)
Biotechnological and Digital Revolution for Climate-Smart Plant Breeding
Francesca Taranto et al.
AGRONOMY-BASEL (2018)
Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study
Ehsan Motazedi et al.
BRIEFINGS IN BIOINFORMATICS (2018)
Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)
Alexandra M. Allen et al.
PLANT BIOTECHNOLOGY JOURNAL (2017)
Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato
Peter G. Vos et al.
THEORETICAL AND APPLIED GENETICS (2017)
Development of a maize 55 K SNP array with improved genome coverage for molecular breeding
Cheng Xu et al.
MOLECULAR BREEDING (2017)
Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives
Awais Rasheed et al.
MOLECULAR PLANT (2017)
Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application
Armin Scheben et al.
PLANT BIOTECHNOLOGY JOURNAL (2017)
Genome of wild olive and the evolution of oil biosynthesis
Turgay Unver et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications
Michael J. Thomson et al.
RICE (2017)
Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
Mathieu Siol et al.
G3-GENES GENOMES GENETICS (2017)
A Distinct Genetic Cluster in Cultivated Chickpea as Revealed by Genome-wide Marker Discovery and Genotyping
Stefano Pavan et al.
PLANT GENOME (2017)
Comparison of Genetic Diversity between Chinese and American Soybean (Glycine max (L.)) Accessions Revealed by High-Density SNPs
Zhangxiong Liu et al.
FRONTIERS IN PLANT SCIENCE (2017)
Genome-Wide Linkage-Disequilibrium Mapping to the Candidate Gene Level in Melon (Cucumis melo)
Amit Gur et al.
SCIENTIFIC REPORTS (2017)
Genome-wide association mapping of black point reaction in common wheat (Triticum aestivum L.)
Jindong Liu et al.
BMC PLANT BIOLOGY (2017)
NGS-Based Genotyping, High-Throughput Phenotyping and Genome-Wide Association Studies Laid the Foundations for Next-Generation Breeding in Horticultural Crops
Nunzio D'Agostino et al.
DIVERSITY-BASEL (2017)
High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool
Mark O. Winfield et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
argyle: An R Package for Analysis of Illumina Genotyping Arrays
Andrew P. Morgan
G3-GENES GENOMES GENETICS (2016)
Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing
F. Taranto et al.
BMC GENOMICS (2016)
Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Stephane D. Nicolas et al.
BMC PLANT BIOLOGY (2016)
Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars
Jose Antonio Campoy et al.
BMC PLANT BIOLOGY (2016)
The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication
Hongru Wang et al.
MOLECULAR PLANT (2016)
Characterization of Low-Strigolactone Germplasm in Pea (Pisum sativum L.) Resistant to Crenate Broomrape (Orobanche crenata Forsk.)
Stefano Pavan et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2016)
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
Massimo Iorizzo et al.
NATURE GENETICS (2016)
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
Kenji Yano et al.
NATURE GENETICS (2016)
Development and validation of the Axiom®Apple480K SNP genotyping array
Luca Bianco et al.
PLANT JOURNAL (2016)
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome
Wayne E. Clarke et al.
THEORETICAL AND APPLIED GENETICS (2016)
Genome-wide association study of 12 agronomic traits in peach
Ke Cao et al.
NATURE COMMUNICATIONS (2016)
Breeding signature of combining ability improvement revealed by a genomic variation map from recurrent selection population in Brassica napus
Xinwang Zhao et al.
SCIENTIFIC REPORTS (2016)
Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm
Richard E. Boyles et al.
PLANT GENOME (2016)
Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato
Umesh R. Rosyara et al.
PLANT GENOME (2016)
ASSIsT: an automatic SNP scoring tool for in- and outbreeding species
Mario Di Guardo et al.
BIOINFORMATICS (2015)
Study on Essential Derivation in Maize: III. Selection and Evaluation of a Panel of Single Nucleotide Polymorphism Loci for Use in European and North American Germplasm
Yves Rousselle et al.
CROP SCIENCE (2015)
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution
Fuguang Li et al.
NATURE BIOTECHNOLOGY (2015)
Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
Zhengkui Zhou et al.
NATURE BIOTECHNOLOGY (2015)
Development, validation and genetic analysis of a large soybean SNP genotyping array
Yun-Gyeong Lee et al.
PLANT JOURNAL (2015)
Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history
Peter G. Vos et al.
THEORETICAL AND APPLIED GENETICS (2015)
Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice
Nisha Singh et al.
SCIENTIFIC REPORTS (2015)
SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
Qijian Song et al.
G3-GENES GENOMES GENETICS (2015)
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.
Amanda M. Hulse-Kemp et al.
G3-GENES GENOMES GENETICS (2015)
Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)
Hasina Begum et al.
PLOS ONE (2015)
Ultrahigh-Density Linkage Map for Cultivated Cucumber (Cucumis sativus L.) Using a Single-Nucleotide Polymorphism Genotyping Array
Mor Rubinstein et al.
PLOS ONE (2015)
SNPQC - an R pipeline for quality control of Illumina SNP genotyping array data
Cedric Gondro et al.
ANIMAL GENETICS (2014)
AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow
Ezequiel L. Nicolazzi et al.
BIOINFORMATICS (2014)
Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon
Padma Nimmakayala et al.
BMC GENOMICS (2014)
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array
Sandra Unterseer et al.
BMC GENOMICS (2014)
An association mapping approach to identify favourable alleles for tomato fruit quality breeding
Valentino Ruggieri et al.
BMC PLANT BIOLOGY (2014)
Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes
Cory D. Hirsch et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2014)
A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding
Haodong Chen et al.
MOLECULAR PLANT (2014)
A reference genome for common bean and genome-wide analysis of dual domestications
Jeremy Schmutz et al.
NATURE GENETICS (2014)
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
Seungill Kim et al.
NATURE GENETICS (2014)
Genomic analyses provide insights into the history of tomato breeding
Tao Lin et al.
NATURE GENETICS (2014)
A whole-genome SNP array (RICE6K) for genomic breeding in rice
Huihui Yu et al.
PLANT BIOTECHNOLOGY JOURNAL (2014)
Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
Shichen Wang et al.
PLANT BIOTECHNOLOGY JOURNAL (2014)
TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
Jeffrey C. Glaubitz et al.
PLOS ONE (2014)
Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus x domestica Borkh)
Luca Bianco et al.
PLOS ONE (2014)
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
Cheng Qin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Biosynthesis, regulation, and domestication of bitterness in cucumber
Yi Shang et al.
SCIENCE (2014)
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
Klaus F. X. Mayer et al.
SCIENCE (2014)
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub et al.
SCIENCE (2014)
SNP ascertainment bias in population genetic analyses: Why it is important, and how to correct it
Joseph Lachance et al.
BIOESSAYS (2013)
Robust methods for population stratification in genome wide association studies
Li Liu et al.
BMC BIOINFORMATICS (2013)
Peach genetic resources: diversity, population structure and linkage disequilibrium
Xiong-wei Li et al.
BMC GENETICS (2013)
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
Ignazio Verde et al.
NATURE GENETICS (2013)
A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity
Jianjian Qi et al.
NATURE GENETICS (2013)
The advantages and limitations of trait analysis with GWAS: a review
Arthur Korte et al.
PLANT METHODS (2013)
Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean
Qijian Song et al.
PLOS ONE (2013)
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
Colin R. Cavanagh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
H. E. L. Lischer et al.
BIOINFORMATICS (2012)
De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
Hamid Ashrafi et al.
BMC GENOMICS (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple
David Chagne et al.
PLOS ONE (2012)
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
Ignazio Verde et al.
PLOS ONE (2012)
Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations
Hoa T. Truong et al.
PLOS ONE (2012)
Development of a Large SNP Genotyping Array and Generation of High-Density Genetic Maps in Tomato
Sung-Chur Sim et al.
PLOS ONE (2012)
The genome of melon (Cucumis melo L.)
Jordi Garcia-Mas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Single nucleotide polymorphism discovery in elite north american potato germplasm
John P. Hamilton et al.
BMC GENOMICS (2011)
RADSeq: next-generation population genetics (vol 9, pg 416, 2010)
John W. Davey et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2011)
Genome sequence and analysis of the tuber crop potato
Xun Xu et al.
NATURE (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire et al.
PLOS ONE (2011)
A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome
Martin W. Ganal et al.
PLOS ONE (2011)
Genetic structure and domestication history of the grape
Sean Myles et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Genome-Wide Association Analysis Identifies Candidate Genes Associated with Iron Deficiency Chlorosis in Soybean
Sujan Mamidi et al.
PLANT GENOME (2011)
Robust relationship inference in genome-wide association studies
Ani Manichaikul et al.
BIOINFORMATICS (2010)
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz et al.
NATURE (2010)
Variance component model to account for sample structure in genome-wide association studies
Hyun Min Kang et al.
NATURE GENETICS (2010)
The genome of the domesticated apple (Malus x domestica Borkh.)
Riccardo Velasco et al.
NATURE GENETICS (2010)
Data quality control in genetic case-control association studies
Carl A. Anderson et al.
NATURE PROTOCOLS (2010)
New approaches to population stratification in genome-wide association studies
Alkes L. Price et al.
NATURE REVIEWS GENETICS (2010)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
The genome of the cucumber, Cucumis sativus L.
Sanwen Huang et al.
NATURE GENETICS (2009)
Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances
Thomas LaFramboise
NUCLEIC ACIDS RESEARCH (2009)
Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers
Jianbing Yan et al.
PLOS ONE (2009)
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Patrick S. Schnable et al.
SCIENCE (2009)
Population Structure and Cryptic Relatedness in Genetic Association Studies
William Astle et al.
STATISTICAL SCIENCE (2009)
Efficient control of population structure in model organism association mapping
Hyun Min Kang et al.
GENETICS (2008)
TASSEL: software for association mapping of complex traits in diverse samples
Peter J. Bradbury et al.
BIOINFORMATICS (2007)
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Olivier Jaillon et al.
NATURE (2007)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Inference of population structure using multilocus genotype data: dominant markers and null alleles
Daniel Falush et al.
MOLECULAR ECOLOGY NOTES (2007)
An Arabidopsis example of association mapping in structured samples
Keyan Zhao et al.
PLOS GENETICS (2007)
Principal components analysis corrects for stratification in genome-wide association studies
Alkes L. Price et al.
NATURE GENETICS (2006)
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
JM Yu et al.
NATURE GENETICS (2006)
The map-based sequence of the rice genome
T Matsumoto et al.
NATURE (2005)
Structure of linkage disequilibrium and phenotypic associations in the maize genome
DL Remington et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)