4.6 Article

It's about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Central dogma rates and the trade-off between precision and economy in gene expression

Jean Hausser et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Delay models for the early embryonic cell cycle oscillator

Jan Rombouts et al.

PLOS ONE (2018)

Article Mathematics, Applied

Julia: A Fresh Approach to Numerical Computing

Jeff Bezanson et al.

SIAM REVIEW (2017)

Article Mathematical & Computational Biology

Mathematical model of TGF-β signalling: feedback coupling is consistent with signal switching

Shabnam Khatibi et al.

BMC SYSTEMS BIOLOGY (2017)

Article Multidisciplinary Sciences

Linear models of activation cascades: analytical solutions and coarse-graining of delayed signal transduction

Mariano Beguerisse-Diaz et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2016)

Article Multidisciplinary Sciences

An epidermis-driven mechanism positions and scales stem cell niches in plants

Jeremy Gruel et al.

SCIENCE ADVANCES (2016)

Review Immunology

Regulation of pattern recognition receptor signalling in plants

Daniel Couto et al.

NATURE REVIEWS IMMUNOLOGY (2016)

Review Plant Sciences

A Moving View: Subcellular Trafficking Processes in Pattern Recognition Receptor-Triggered Plant Immunity

Sara Ben Khaled et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 53 (2015)

Article Mathematical & Computational Biology

Robust and efficient parameter estimation in dynamic models of biological systems

Attila Gabor et al.

BMC SYSTEMS BIOLOGY (2015)

Review Biophysics

MAP Kinase Modules: The Excursion Model and the Steps that Count

Alexander T. Piala et al.

BIOPHYSICAL JOURNAL (2014)

Article Microbiology

The Calcium-Dependent Protein Kinase CPK28 Buffers Plant Immunity and Regulates BIK1 Turnover

Jacqueline Monaghan et al.

CELL HOST & MICROBE (2014)

Article Multidisciplinary Sciences

Amplitude and phase dynamics in oscillators with distributed-delay coupling

Y. N. Kyrychko et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2013)

Article Genetics & Heredity

Reduction of dynamical biochemical reactions networks in computational biology

O. Radulescu et al.

Frontiers in Genetics (2012)

Article Mathematics, Applied

Runge-Kutta pairs of order 5(4) satisfying only the first column simplifying assumption

Ch. Tsitouras

COMPUTERS & MATHEMATICS WITH APPLICATIONS (2011)

Editorial Material Education, Scientific Disciplines

Drawing an elephant with four complex parameters

Juergen Mayer et al.

AMERICAN JOURNAL OF PHYSICS (2010)

Article Biochemical Research Methods

ABC-SysBio-approximate Bayesian computation in Python with GPU support

Juliane Liepe et al.

BIOINFORMATICS (2010)

Article Mathematical & Computational Biology

Robustness from flexibility in the fungal circadian clock

Ozgur E. Akman et al.

BMC SYSTEMS BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Multisite protein phosphorylation - from molecular mechanisms to kinetic models

Carlos Salazar et al.

FEBS JOURNAL (2009)

Article Biochemistry & Molecular Biology

Sequential and Compartment-specific Phosphorylation Controls the Life Cycle of the Circadian CLOCK Protein

Hsiu-Cheng Hung et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

Sean P. Gordon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biology

Dissecting the dynamics of the Hes1 genetic oscillator

Hiroshi Momiji et al.

JOURNAL OF THEORETICAL BIOLOGY (2008)

Review Cell Biology

Design principles of biochemical oscillators

Bela Novak et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)

Article Pharmacology & Pharmacy

Implementation of a transit compartment model for describing drug absorption in pharmacokinetic studies

Radojka M. Savic et al.

JOURNAL OF PHARMACOKINETICS AND PHARMACODYNAMICS (2007)

Review Cell Biology

Physicochemical modelling of cell signalling pathways

Bree B. Aldridge et al.

NATURE CELL BIOLOGY (2006)

Article Cell Biology

Use and abuse of the quasi-steady-state approximation

E. H. Flach et al.

IEE PROCEEDINGS SYSTEMS BIOLOGY (2006)

Article Biochemical Research Methods

Signal processing in the TGF-beta superfamily ligand-receptor network

Jose M. G. Vilar et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Control of MAPK signalling: from complexity to what really matters

JJ Hornberg et al.

ONCOGENE (2005)

Article Chemistry, Physical

Optimal length and signal amplification in weakly activated signal transduction cascades

M Chaves et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2004)

Article Biochemistry & Molecular Biology

Mathematical models of protein kinase signal transduction

R Heinrich et al.

MOLECULAR CELL (2002)

Article Mathematics, Applied

Numerical modelling in biosciences using delay differential equations

GA Bocharov et al.

JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS (2000)

Article Multidisciplinary Sciences

A synthetic oscillatory network of transcriptional regulators

MB Elowitz et al.

NATURE (2000)

Article Multidisciplinary Sciences

Construction of a genetic toggle switch in Escherichia coli

TS Gardner et al.

NATURE (2000)