相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Short paired-end reads trump long single-end reads for expression analysis
Adam H. Freedman et al.
BMC BIOINFORMATICS (2020)
EpiRegio: analysis and retrieval of regulatory elements linked to genes
Nina Baumgarten et al.
NUCLEIC ACIDS RESEARCH (2020)
Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration
Rinki Ratnapriya et al.
NATURE GENETICS (2019)
Predictability of human differential gene expression
Megan Crow et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Gianni Monaco et al.
CELL REPORTS (2019)
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Jianhong Ou et al.
BMC GENOMICS (2018)
Massive mining of publicly available RNA-seq data from human and mouse
Alexander Lachmann et al.
NATURE COMMUNICATIONS (2018)
A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq
Bin Li et al.
SCIENTIFIC REPORTS (2017)
Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues
Jingyao Zeng et al.
GENE (2016)
Unstable Expression of Commonly Used Reference Genes in Rat Pancreatic Islets Early after Isolation Affects Results of Gene Expression Studies
Lucie Kosinova et al.
PLOS ONE (2016)
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
Andrew D. Rouillard et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
Aleksandra E. Kornienko et al.
GENOME BIOLOGY (2016)
A benchmark for RNA-seq quantification pipelines (vol 17, 74, 2016)
Mingxiang Teng et al.
GENOME BIOLOGY (2016)
Tissue-based map of the human proteome
Mathias Uhlen et al.
SCIENCE (2015)
The Impact of Normalization Methods on RNA-Seq Data Analysis
J. Zyprych-Walczak et al.
BIOMED RESEARCH INTERNATIONAL (2015)
Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?
Shanrong Zhao et al.
PLOS ONE (2015)
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics
Linn Fagerberg et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
Sequencing depth and coverage: key considerations in genomic analyses
David Sims et al.
NATURE REVIEWS GENETICS (2014)
Human housekeeping genes, revisited
Eli Eisenberg et al.
TRENDS IN GENETICS (2013)
Pseudogenes as Weaknesses of ACTB (Actb) and GAPDH (Gapdh) Used as Reference Genes in Reverse Transcription and Polymerase Chain Reactions
Yuan Sun et al.
PLOS ONE (2012)
Estimation of alternative splicing isoform frequencies from RNA-Seq data
Marius Nicolae et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
NATURE METHODS (2010)
The UCSC Genome Browser database: update 2010
Brooke Rhead et al.
NUCLEIC ACIDS RESEARCH (2010)
Gene Expression in Chicken Reveals Correlation with Structural Genomic Features and Conserved Patterns of Transcription in the Terrestrial Vertebrates
Haisheng Nie et al.
PLOS ONE (2010)
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
Stephen A. Bustin et al.
CLINICAL CHEMISTRY (2009)
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
Daniel Ramskold et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Does this band make sense? Limits to expression based cancer studies
Timothy K. Williams et al.
CANCER LETTERS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
Marc Sultan et al.
SCIENCE (2008)
On the nature of human housekeeping genes
Jiang Zhu et al.
TRENDS IN GENETICS (2008)
Evidence Based Selection of Housekeeping Genes
Hendrik J. M. de Jonge et al.
PLOS ONE (2007)
Origin of phenotypes: Genes and transcripts
Thomas R. Gingeras
GENOME RESEARCH (2007)
What is a gene, post-ENCODE? History and updated definition
Mark B. Gerstein et al.
GENOME RESEARCH (2007)
Housekeeping and tissue-specific genes in mouse tissues
Kouame E. Kouadjo et al.
BMC GENOMICS (2007)
Mammalian housekeeping genes evolve more slowly than tissue-specific genes
LQ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Validation of housekeeping genes for normalizing RNA expression in real-time PCR
K Dheda et al.
BIOTECHNIQUES (2004)
A new mathematical model for relative quantification in real-time RT-PCR
MW Pfaffl
NUCLEIC ACIDS RESEARCH (2001)
Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
JA Warrington et al.
PHYSIOLOGICAL GENOMICS (2000)