4.8 Article

Misactivation of multiple starvation responses in yeast by loss of tRNA modifications

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Multidisciplinary

Absolute Quantification of Noncoding RNA by Microscale Thermophoresis

Dominik Jacob et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

Article Biochemistry & Molecular Biology

Kti12, a PSTK-like tRNA dependent ATPase essential for tRNA modification by Elongator

Roscislaw Krutyholowa et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

MODOMICS: a database of RNA modification pathways. 2017 update

Pietro Boccaletto et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

Cooperativity between different tRNA modifications and their modification pathways

Mikolaj Sokolowski et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2018)

Article Multidisciplinary Sciences

Collaboration of tRNA modifications and elongation factor eEF1A in decoding and nonsense suppression

Roland Klassen et al.

SCIENTIFIC REPORTS (2018)

Article Genetics & Heredity

Unfolded Protein Response Suppression in Yeast by Loss of tRNA Modifications

Alexander Bruch et al.

Article Biochemistry & Molecular Biology

Independent suppression of ribosomal+1 frameshifts by different tRNA anticodon loop modifications

Roland Klassen et al.

RNA BIOLOGY (2017)

Article Cell Biology

Novel tRNA function in amino acid sensing of yeast Tor complex1

Yoshiaki Kamada

GENES TO CELLS (2017)

Article Biochemistry & Molecular Biology

Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation

Hsin-Jung Chou et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

Cytosolic proteostasis through importing of misfolded proteins into mitochondria

Linhao Ruan et al.

NATURE (2017)

Review Biochemistry & Molecular Biology

Wobble uridine modifications-a reason to live, a reason to die?!

Raffael Schaffrath et al.

RNA BIOLOGY (2017)

Review Biochemistry & Molecular Biology

tRNA Modifications: Impact on Structure and Thermal Adaptation

Christian Lorenz et al.

BIOMOLECULES (2017)

Article Endocrinology & Metabolism

Loss of ncm5 and mcm5 wobble uridine side chains results in an altered metabolic profile

Tony Karlsborn et al.

METABOLOMICS (2016)

Article Biochemistry & Molecular Biology

tRNA anticodon loop modifications ensure protein homeostasis and cell morphogenesis in yeast

Roland Klassen et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Cell Biology

Global translational impacts of the loss of the tRNA modification t(6)A in yeast

Patrick C. Thiaville et al.

MICROBIAL CELL (2016)

Article Biochemistry & Molecular Biology

Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity

Danny D. Nedialkova et al.

Article Cell Biology

tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae

Jadyn R. Damon et al.

MOLECULAR BIOLOGY OF THE CELL (2015)

Article Biochemistry & Molecular Biology

Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria

Patrick C. Thiaville et al.

MOLECULAR MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures

Kshitiz Tyagi et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The role of wobble uridine modifications in+1 translational frameshifting in eukaryotes

Hasan Tukenmez et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Review Biochemistry & Molecular Biology

tRNA modifications regulate translation during cellular stress

Chen Gu et al.

FEBS LETTERS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification

Kenjyo Miyauchi et al.

NATURE CHEMICAL BIOLOGY (2013)

Article Genetics & Heredity

Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling

Boris Zinshteyn et al.

PLOS GENETICS (2013)

Article Biochemical Research Methods

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

Hanbo Chen et al.

BMC BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs

Marie-Claire Daugeron et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Article Biochemistry & Molecular Biology

Tor Directly Controls the Atg1 Kinase Complex To Regulate Autophagy

Yoshiaki Kamada et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Review Microbiology

Nutritional control via Tor signaling in Saccharomyces cerevisiae

John R. Rohde et al.

CURRENT OPINION IN MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Genome-wide expression analysis reveals TORC1-dependent and -independent functions of Sch9

Bart Smets et al.

FEMS YEAST RESEARCH (2008)

Article Biochemistry & Molecular Biology

Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems

Yumi Nakai et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Eukaryotic wobble uridine modifications promote a functionally redundant decoding system

Marcus J. O. Johansson et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

The Gene Ontology project in 2008

Midori A. Harris et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Rapid tRNA decay can result from lack of nonessential modifications

A Alexandrov et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

tRNA(Glu) wobble uridine methylation by Trm9 identifies Elongator's key role for zymocin-induced cell death in yeast

D Jablonowski et al.

MOLECULAR MICROBIOLOGY (2006)

Article Biochemistry & Molecular Biology

An early step in wobble uridine tRNA modification requires the Elongator complex

B Huang et al.

Review Microbiology

Translational regulation of GCN4 and the general amino acid control of yeast

AG Hinnebusch

ANNUAL REVIEW OF MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine

JL Crespo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast -: art. no. e23

U Gueldener et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Biochemical Research Methods

Getting started with yeast

F Sherman

GUIDE TO YEAST GENETICS AND MOLECULAR AND CELL BIOLOGY, PT B (2002)

Review Biochemistry & Molecular Biology

Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast

K Natarajan et al.

MOLECULAR AND CELLULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae

A Rodríguez et al.

BIOCHEMICAL JOURNAL (2001)

Article Biochemistry & Molecular Biology

A new mathematical model for relative quantification in real-time RT-PCR

MW Pfaffl

NUCLEIC ACIDS RESEARCH (2001)

Article Multidisciplinary Sciences

RAC, a stable ribosome-associated complex in yeast formed by the DnaK-DnaJ homologs Ssz1p and zuotin

M Gautschi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Cell Biology

Genomic expression programs in the response of yeast cells to environmental changes

AP Gasch et al.

MOLECULAR BIOLOGY OF THE CELL (2000)

Article Multidisciplinary Sciences

A ubiquitin-like system mediates protein lipidation

Y Ichimura et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

The itinerary of a vesicle component, Aut7p/Cvt5p, terminates in the yeast vacuole via the autophagy/Cvt pathways

WP Huang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)