相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs
Yu A. Malkov et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2020)
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
Michal Slyper et al.
NATURE MEDICINE (2020)
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
Geoffrey Schiebinger et al.
CELL (2019)
The single-cell transcriptional landscape of mammalian organogenesis
Junyue Cao et al.
NATURE (2019)
Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data
George C. Linderman et al.
NATURE METHODS (2019)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
Jellert T. Gaublomme et al.
NATURE COMMUNICATIONS (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Dimensionality reduction for visualizing single-cell data using UMAP
Etienne Becht et al.
NATURE BIOTECHNOLOGY (2019)
A test metric for assessing single-cell RNA-seq batch correction
Maren Buettner et al.
NATURE METHODS (2019)
Visualizing structure and transitions in high-dimensional biological data
Kevin R. Moon et al.
NATURE BIOTECHNOLOGY (2019)
From Louvain to Leiden: guaranteeing well-connected communities
V. A. Traag et al.
SCIENTIFIC REPORTS (2019)
Comparative analysis of sequencing technologies for single-cell transcriptomics
Kedar Nath Natarajan et al.
GENOME BIOLOGY (2019)
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
Avi Srivastava et al.
GENOME BIOLOGY (2019)
Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
David van Dijk et al.
CELL (2018)
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
Laleh Haghverdi et al.
NATURE BIOTECHNOLOGY (2018)
Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding
Alexander B. Rosenberg et al.
SCIENCE (2018)
Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks
Hyunghoon Cho et al.
CELL SYSTEMS (2018)
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research
Sanchita Bhattacharya et al.
SCIENTIFIC DATA (2018)
A web server for comparative analysis of single-cell RNA-seq data
Amir Alavi et al.
NATURE COMMUNICATIONS (2018)
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Marlon Stoeckius et al.
GENOME BIOLOGY (2018)
dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments
Viktor Petukhov et al.
GENOME BIOLOGY (2018)
Simultaneous epitope and transcriptome measurement in single cells
Marlon Stoeckius et al.
NATURE METHODS (2017)
Pooled CRISPR screening with single-cell transcriptome readout
Paul Datlinger et al.
NATURE METHODS (2017)
ANN-Benchmarks: A Benchmarking Tool for Approximate Nearest Neighbor Algorithms
Martin Aumueller et al.
SIMILARITY SEARCH AND APPLICATIONS, SISAP 2017 (2017)
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
Atray Dixit et al.
CELL (2016)
Diffusion pseudotime robustly reconstructs lineage branching
Laleh Haghverdi et al.
NATURE METHODS (2016)
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Evan Z. Macosko et al.
CELL (2015)
Spatial reconstruction of single-cell gene expression data
Rahul Satija et al.
NATURE BIOTECHNOLOGY (2015)
ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software
Mathieu Jacomy et al.
PLOS ONE (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Simone Picelli et al.
NATURE METHODS (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Shannon and von Neumann entropy of random networks with heterogeneous expected degree
Kartik Anand et al.
PHYSICAL REVIEW E (2011)
Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions
N. Halko et al.
SIAM REVIEW (2011)
Fast unfolding of communities in large networks
Vincent D. Blondel et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)
A tutorial on spectral clustering
Ulrike von Luxburg
STATISTICS AND COMPUTING (2007)
Adjusting batch effects in microarray expression data using empirical Bayes methods
W. Evan Johnson et al.
BIOSTATISTICS (2007)
Statistical mechanics of community detection
Jorg Reichardt et al.
PHYSICAL REVIEW E (2006)
Diffusion maps
Ronald R. Coifman et al.
APPLIED AND COMPUTATIONAL HARMONIC ANALYSIS (2006)
分享论文
