相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation
Hasi Yu et al.
CELL REPORTS (2020)
Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data
Karl J. Nordstroem et al.
NUCLEIC ACIDS RESEARCH (2019)
Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato
Zixian Zeng et al.
GENOME BIOLOGY (2019)
Exploring the relationship between intron retention and chromatin accessibility in plants
Fahad Ullah et al.
BMC GENOMICS (2018)
Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome
Cristiane P. G. Calixto et al.
PLANT CELL (2018)
Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome
Hainan Zhao et al.
PLANT PHYSIOLOGY (2018)
Multilevel Regulation of Abiotic Stress Responses in Plants
David C. Haak et al.
FRONTIERS IN PLANT SCIENCE (2017)
Plant hormone-mediated regulation of stress responses
Vivek Verma et al.
BMC PLANT BIOLOGY (2016)
Identification of Regulatory DNA Elements Using Genome-wide Mapping of DNase I Hypersensitive Sites during Tomato Fruit Development
Zhengkun Qiu et al.
MOLECULAR PLANT (2016)
MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis
Saet Buyl Lee et al.
PLANT AND CELL PHYSIOLOGY (2016)
Open chromatin reveals the functional maize genome
Eli Rodgers-Melnick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures
Bo Zhu et al.
PLANT CELL (2015)
Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana
Zhen Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Chromatin compaction under mixed salt conditions: Opposite effects of sodium and potassium ions on nucleosome array folding
Abdollah Allahverdi et al.
SCIENTIFIC REPORTS (2015)
The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization
Alexandra Steffens et al.
PLOS BIOLOGY (2015)
Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
Irina Makarevitch et al.
PLoS Genetics (2015)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
deepTools: a flexible platform for exploring deep-sequencing data
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2014)
Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A-thaliana
Alessandra M. Sullivan et al.
CELL REPORTS (2014)
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
Jiang Zhu et al.
CELL (2013)
Enhanced seed production under prolonged heat stress conditions in Arabidopsis thaliana plants deficient in cytosolic ascorbate peroxidase 2
Nobuhiro Suzuki et al.
JOURNAL OF EXPERIMENTAL BOTANY (2013)
Differential analysis of gene regulation at transcript resolution with RNA-seq
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2013)
Uniform, optimal signal processing of mapped deep-sequencing data
Vibhor Kumar et al.
NATURE BIOTECHNOLOGY (2013)
Chromatin marks identify critical cell types for fine mapping complex trait variants
Gosia Trynka et al.
NATURE GENETICS (2013)
Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data
Jason Piper et al.
NUCLEIC ACIDS RESEARCH (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Epigenetic control of transposon transcription and mobility in Arabidopsis
Etienne Bucher et al.
CURRENT OPINION IN PLANT BIOLOGY (2012)
High-resolution mapping of open chromatin in the rice genome
Wenli Zhang et al.
GENOME RESEARCH (2012)
Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
Housheng Hansen He et al.
GENOME RESEARCH (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Architecture of the human regulatory network derived from ENCODE data
Mark B. Gerstein et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis
Wenli Zhang et al.
PLANT CELL (2012)
Receptor tyrosine kinase ErbB2 translocates into mitochondria and regulates cellular metabolism
Yan Ding et al.
NATURE COMMUNICATIONS (2012)
Hormone balance and abiotic stress tolerance in crop plants
Zvi Peleg et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Lingyun Song et al.
GENOME RESEARCH (2011)
Overexpression of AtMYB52 confers ABA hypersensitivity and drought tolerance
Min Young Park et al.
MOLECULES AND CELLS (2011)
DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing
Fabienne Brenet et al.
PLOS ONE (2011)
Epigenetic regulation in cell reprogramming revealed by genome-wide analysis
Chang Pyo Hong et al.
EPIGENOMICS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Electrostatic Origin of Salt-Induced Nucleosome Array Compaction
Nikolay Korolev et al.
BIOPHYSICAL JOURNAL (2010)
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Lihua J. Zhu et al.
BMC BIOINFORMATICS (2010)
Epigenetic Mechanisms that Regulate Cell Identity
Maria J. Barrero et al.
CELL STEM CELL (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
Kerstin Kaufmann et al.
NATURE PROTOCOLS (2010)
Research on plant abiotic stress responses in the post-genome era: past, present and future
Takashi Hirayama et al.
PLANT JOURNAL (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Importance of abiotic stress as a range-limit determinant for European plants: insights from species responses to climatic gradients
Signe Normand et al.
GLOBAL ECOLOGY AND BIOGEOGRAPHY (2009)
Mapping accessible chromatin regions using Sono-Seq
Raymond K. Auerbach et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Dynamic regulation of nucleosome positioning in the human genome
Dustin E. Schones et al.
CELL (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
FAIRE ((F)under-barormaldehyde-(A)under-barssisted (I)under-barsolation of (R)under-baregulatory (E)under-barlements) isolates active regulatory elements from human chromatin
Paul G. Giresi et al.
GENOME RESEARCH (2007)
Experimental evidence for the influence of molecular crowding on nuclear architecture
Karsten Richter et al.
JOURNAL OF CELL SCIENCE (2007)
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
Joachim Kilian et al.
PLANT JOURNAL (2007)
Analysis of gene expression profiles in Arabidopsis salt overly sensitive mutants sos2-1 and sos3-1
A Kamei et al.
PLANT CELL AND ENVIRONMENT (2005)
affy -: analysis of Affymetrix GeneChip data at the probe level
L Gautier et al.
BIOINFORMATICS (2004)
Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites
GE Crawford et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Comparative genomics in salt tolerance between Arabidopsis and Arabidopsis-related halophyte salt cress using Arabidopsis microarray
T Taji et al.
PLANT PHYSIOLOGY (2004)
Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance
WX Wang et al.
PLANTA (2003)
mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci
JE Dorweiler et al.
PLANT CELL (2000)
Stress and transposable elements:: co-evolution or useful parasites?
P Capy et al.
HEREDITY (2000)
Heat shock protein 101 plays a crucial role in thermotolerance in arabidopsis
C Queitsch et al.
PLANT CELL (2000)
分享论文
