相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm
Viacheslav Kapilevich et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2019)
An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data
Oluwatosin Oluwadare et al.
BIOLOGICAL PROCEDURES ONLINE (2019)
A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data
Oluwatosin Oluwadare et al.
BMC GENOMICS (2018)
3D Genome Reconstruction with ShRec3D+and Hi-C Data
Jiangeng Li et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2018)
3D genome structure modeling by Lorentzian objective function
Tuan Trieu et al.
NUCLEIC ACIDS RESEARCH (2017)
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
Francois Serra et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data
Tuan Trieu et al.
BIOINFORMATICS (2016)
HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
Chenchen Zou et al.
GENOME BIOLOGY (2016)
Analysis methods for studying the 3D architecture of the genome
Ferhat Ay et al.
GENOME BIOLOGY (2015)
A statistical approach for inferring the 3D structure of the genome
Nelle Varoquaux et al.
BIOINFORMATICS (2014)
3D genome reconstruction from chromosomal contacts
Annick Lesne et al.
NATURE METHODS (2014)
Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact data
Tuan Trieu et al.
NUCLEIC ACIDS RESEARCH (2014)
3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data
Zhizhuo Zhang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2013)
The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling
Cheng Peng et al.
NUCLEIC ACIDS RESEARCH (2013)
Bayesian Inference of Spatial Organizations of Chromosomes
Ming Hu et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Genome structure determination via 3C-based data integration by the Integrative Modeling Platform
Davide Bau et al.
METHODS (2012)
Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies
Daniel Russel et al.
PLOS BIOLOGY (2012)
Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling
Mathieu Rousseau et al.
BMC BIOINFORMATICS (2011)
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
Eitan Yaffe et al.
NATURE GENETICS (2011)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Data visualization with multidimensional scaling
Andreas Buja et al.
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS (2008)
On the implementation of an interior-point filter line-search algorithm for large-scale nonlinear programming
A Wachter et al.
MATHEMATICAL PROGRAMMING (2006)
分享论文
