4.6 Article

Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov.

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Engineering, Environmental

RNA Stable Isotope Probing of Potential Feammox Population in Paddy Soil

Hu Li et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2019)

Review Microbiology

Geobacter Protein Nanowires

Derek R. Lovley et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Microbiology

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Review Microbiology

Culturing the human microbiota and culturomics'

Jean-Christophe Lagier et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Plant Sciences

Metatranscriptomic insights into microbial consortia driving methane metabolism in paddy soils

Yoko Masuda et al.

SOIL SCIENCE AND PLANT NUTRITION (2018)

Article Biotechnology & Applied Microbiology

Denitrification by Anaeromyxobacter dehalogenans, a Common Soil Bacterium Lacking the Nitrite Reductase Genes nirS and nirK

Jenny R. Onley et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)

Article Microbiology

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

Seok-Hwan Yoon et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

Jaime Huerta-Cepas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Biotechnology & Applied Microbiology

Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils

Dawn E. Holmes et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Article Biochemical Research Methods

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

Michael Richter et al.

BIOINFORMATICS (2016)

Review Biochemistry & Molecular Biology

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

Minoru Kanehisa et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Microbiology

Extracellular electron transfer mechanisms between microorganisms and minerals

Liang Shi et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Multidisciplinary Sciences

Differential Assemblage of Functional Units in Paddy Soil Microbiomes

Yongkyu Kim et al.

PLOS ONE (2015)

Review Biotechnology & Applied Microbiology

Multilocus sequence analysis (MLSA) in prokaryotic taxonomy

Stefanie P. Glaeser et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Review Biochemical Research Methods

Microbial nanowires for bioenergy applications

Nikhil S. Malvankar et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Article Microbiology

Geobacter soli sp nov., a dissimilatory Fe(III)-reducing bacterium isolated from forest soil

Shungui Zhou et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)

Article Microbiology

A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights

Qi-Long Qin et al.

JOURNAL OF BACTERIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Anaerobic 4-chlorophenol mineralization in an enriched culture under iron-reducing conditions

Zhiling Li et al.

JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2014)

Article Biochemistry & Molecular Biology

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

Chengwei Luo et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Microbiology

Genomic analyses of bacterial porin-cytochrome gene clusters

Liang Shi et al.

FRONTIERS IN MICROBIOLOGY (2014)

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

Article Engineering, Environmental

Arsenic Dissolution from Japanese Paddy Soil by a Dissimilatory Arsenate-Reducing Bacterium Geobacter sp OR-1

Toshihiko Ohtsuka et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2013)

Article Microbiology

Geobacter luticola sp nov., an Fe(III)-reducing bacterium isolated from lotus field mud

Samson Viulu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

Hideomi Itoh et al.

MICROBES AND ENVIRONMENTS (2013)

Article Biotechnology & Applied Microbiology

Toward almost closed genomes with GapFiller

Marten Boetzer et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Nabil-Fareed Alikhan et al.

BMC GENOMICS (2011)

Article Biotechnology & Applied Microbiology

Isolation of functional single cells from environments using a micromanipulator: application to study denitrifying bacteria

Naoaki Ashida et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

genoPlotR: comparative gene and genome visualization in R

Lionel Guy et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Microbiology

Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.

Kelly P. Nevin et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Agronomy

The taxonomy of rhizobia: an overview

Anne Willems

PLANT AND SOIL (2006)

Article Biotechnology & Applied Microbiology

Geobacter lovleyi sp nov strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium

Y Sung et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Microbiology

Towards a genome-based taxonomy for prokaryotes

KT Konstantinidis et al.

JOURNAL OF BACTERIOLOGY (2005)

Article Microbiology

Geobacter bemidjiensis sp nov and Geobacter psychrophilus sp nov., two novel Fe(III)-reducing subsurface isolates

KP Nevin et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Article Microbiology

Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.

DE Holmes et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Mauve: Multiple alignment of conserved genomic sequence with rearrangements

ACE Darling et al.

GENOME RESEARCH (2004)

Article Microbiology

Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers

JD Coates et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)