相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
Robert D. Stewart et al.
NATURE BIOTECHNOLOGY (2019)
Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes
Thomas C. A. Hitch et al.
ENVIRONMENTAL POLLUTION (2018)
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Rekha Seshadri et al.
NATURE BIOTECHNOLOGY (2018)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart et al.
NATURE COMMUNICATIONS (2018)
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
Olov Svartstrom et al.
ISME JOURNAL (2017)
Complex pectin metabolism by gut bacteria reveals novel catalytic functions
Didier Ndeh et al.
NATURE (2017)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers et al.
NATURE BIOTECHNOLOGY (2017)
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle
Marc D. Auffret et al.
MICROBIOME (2017)
Stress and stability: applying the Anna Karenina principle to animal microbiomes
Jesse R. Zaneveld et al.
NATURE MICROBIOLOGY (2017)
Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle
Milton Thomas et al.
SCIENTIFIC REPORTS (2017)
Bacteria from Animals as a Pool of Antimicrobial Resistance Genes
Maria Angeles Argudin et al.
ANTIBIOTICS-BASEL (2017)
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
Christine G. Elsik et al.
NUCLEIC ACIDS RESEARCH (2016)
An approach to including protein quality when assessing the net contribution of livestock to human food supply
P. Ertl et al.
ANIMAL (2016)
Fuelling the future: microbial engineering for the production of sustainable biofuels
James C. Liao et al.
NATURE REVIEWS MICROBIOLOGY (2016)
A reference gene catalogue of the pig gut microbiome
Liang Xiao et al.
NATURE MICROBIOLOGY (2016)
The rumen microbial metagenome associated with high methane production in cattle
R. John Wallace et al.
BMC GENOMICS (2015)
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Fredrik Backhed et al.
CELL HOST & MICROBE (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
A catalog of the mouse gut metagenome
Liang Xiao et al.
NATURE BIOTECHNOLOGY (2015)
Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii
Xiaolei Ze et al.
MBIO (2015)
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Gemma Henderson et al.
SCIENTIFIC REPORTS (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Protein production: planet, profit, plus people?
Harry Aiking
AMERICAN JOURNAL OF CLINICAL NUTRITION (2014)
Biomass Utilization by Gut Microbiomes
Bryan A. White et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)
An integrated catalog of reference genes in the human gut microbiome
Junhua Li et al.
NATURE BIOTECHNOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
Rumen microbial (meta) genomics and its application to ruminant production
D. P. Morgavi et al.
ANIMAL (2013)
Fungal populations and mycotoxins in silages: From occurrence to analysis
Federica Cheli et al.
ANIMAL FEED SCIENCE AND TECHNOLOGY (2013)
Differential abundance analysis for microbial marker-gene surveys
Joseph N. Paulson et al.
NATURE METHODS (2013)
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
Abdessamad El Kaoutari et al.
NATURE REVIEWS MICROBIOLOGY (2013)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit
Jens Roat Kultima et al.
PLOS ONE (2012)
Genome wide analysis of the bovine mucin genes and their gastrointestinal transcription profile
Prisca R. Hoorens et al.
BMC GENOMICS (2011)
Selective removal of human DNA from metagenomic DNA samples extracted from dental plaque
Stephanie J. Hunter et al.
JOURNAL OF BASIC MICROBIOLOGY (2011)
Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach
Lisa M. Durso et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2011)
Taxonomic classification of metagenomic shotgun sequences with CARMA3
Wolfgang Gerlach et al.
NUCLEIC ACIDS RESEARCH (2011)
iPath2.0: interactive pathway explorer
Takuji Yamada et al.
NUCLEIC ACIDS RESEARCH (2011)
The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist
Garret Suen et al.
PLOS ONE (2011)
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
Matthias Hess et al.
SCIENCE (2011)
Mitigating climate change: the role of domestic livestock
M. Gill et al.
ANIMAL (2010)
De novo assembly of human genomes with massively parallel short read sequencing
Ruiqiang Li et al.
GENOME RESEARCH (2010)
Dynamics in the microbiology of maize silage during whole-season storage
I. M. L. D. Storm et al.
JOURNAL OF APPLIED MICROBIOLOGY (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Ab initio gene identification in metagenomic sequences
Wenhan Zhu et al.
NUCLEIC ACIDS RESEARCH (2010)
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
Peter J. Turnbaugh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Lessons from the cow: What the ruminant animal can teach us about consolidated bioprocessing of cellulosic biomass
Paul J. Weimer et al.
BIORESOURCE TECHNOLOGY (2009)
A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera
Marc Deloger et al.
JOURNAL OF BACTERIOLOGY (2009)
ARDB-Antibiotic Resistance Genes Database
Bo Liu et al.
NUCLEIC ACIDS RESEARCH (2009)
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Jennifer M. Brulc et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
From Cellulosomes to Cellulosomics
Edward A. Bayer et al.
CHEMICAL RECORD (2008)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Improved extraction of PCR-quality community DNA from digesta and fecal samples
ZT Yu et al.
BIOTECHNIQUES (2004)
分享论文
