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Avinash B. Patel et al.
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Yang Yang et al.
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Peter Refsing Andersen et al.
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Sreenivas Chavali et al.
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C. Plaschka et al.
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Robert K. Louder et al.
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Dali server update
Liisa Holm et al.
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Charles N. J. Ravarani et al.
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Maria J. E. Koster et al.
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Sarah Sainsbury et al.
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Robert Carter et al.
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Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome
Folkert J. van Werven et al.
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Database resources of the National Center for Biotechnology Information
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Opposing effects of polyglutamine expansion on native protein complexes contribute to SCA1
Janghoo Lim et al.
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Rebekka O. Sprouse et al.
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Polyglutamine domain modulates the TBP-TFIIB interaction: implications for its normal function and neurodegeneration
Meyer J. Friedman et al.
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Analysis of TATA-binding protein 2 (TBP2) and TBP expression suggests different roles for the two proteins in regulation of gene expression during oogenesis and early mouse development
Emese Gazdag et al.
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Kathryn L. Huisinga et al.
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MUSTANG: A multiple structural alignment algorithm
Arun S. Konagurthu et al.
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BioGRID: a general repository for interaction datasets
Chris Stark et al.
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The HHpred interactive server for protein homology detection and structure prediction
J Söding et al.
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The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
Z Dosztányi et al.
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MP Klejman et al.
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TBP, a polyglutamine tract containing protein, accumulates in Alzheimer's disease
SJ Reid et al.
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UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
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Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes
M Bleichenbacher et al.
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ZS Juo et al.
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XM Zhao et al.
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Interplay of TBP inhibitors in global transcriptional control
C Chitikila et al.
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Quantitation of the RNA polymerase II transcription machinery in yeast
T Borggrefe et al.
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K Kamada et al.
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BF Pugh
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