相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Pierre-Alain Chaumeil et al.
BIOINFORMATICS (2020)
Autometa: automated extraction of microbial genomes from individual shotgun metagenomes
Ian J. Miller et al.
NUCLEIC ACIDS RESEARCH (2019)
Localized production of defence chemicals by intracellular symbionts of Haliclona sponges
Ma Diarey Tianero et al.
NATURE MICROBIOLOGY (2019)
Natural Products and Synthetic Biology: Where We Are and Where We Need To Go
Sylvia Kunakom et al.
MSYSTEMS (2019)
Automated structure prediction of trans-acyltransferase polyketide synthase products
Eric J. N. Helfrich et al.
NATURE CHEMICAL BIOLOGY (2019)
A microbial factory for defensive kahalalides in a tripartite marine symbiosis
Jindong Zan et al.
SCIENCE (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
Joshua D. Sackett et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2019)
Marine natural products
Anthony R. Carroll et al.
NATURAL PRODUCT REPORTS (2019)
Chemistry and Biological Activities of the Marine Sponges of the Genera Mycale (Arenochalina), Biemna and Clathria
Amr El-Demerdash et al.
MARINE DRUGS (2018)
Accessing chemical diversity from the uncultivated symbionts of small marine animals
Thomas E. Smith et al.
NATURE CHEMICAL BIOLOGY (2018)
Single-bacterial genomics validates rich and varied specialized metabolism of uncultivated Entotheonella sponge symbionts
Tetsushi Mori et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Cell-free synthetic biology for in vitro biosynthesis of pharmaceutical natural products
Jian Li et al.
SYNTHETIC AND SYSTEMS BIOTECHNOLOGY (2018)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
Beate M. Slaby et al.
ISME JOURNAL (2017)
25 years of serving the community with ribosomal RNA gene reference databases and tools
Frank Oliver Gloeckner et al.
JOURNAL OF BIOTECHNOLOGY (2017)
Marine Sponge Natural Products with Anticancer Potential: An Updated Review
Cinzia Calcabrini et al.
MARINE DRUGS (2017)
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2017)
Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges
Gerald Lackner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Nonribosomal Peptides from Marine Microbes and Their Antimicrobial and Anticancer Potential
Shivankar Agrawal et al.
FRONTIERS IN PHARMACOLOGY (2017)
Increased Biosynthetic Gene Dosage in a Genome-Reduced Defensive Bacterial Symbiont
Juan Lopera et al.
MSYSTEMS (2017)
BBMerge - Accurate paired shotgun read merging via overlap
Brian Bushnell et al.
PLOS ONE (2017)
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
Monika Balvociute et al.
BMC GENOMICS (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
Lack of Overt Genome Reduction in the Bryostatin-Producing Bryozoan Symbiont Candidatus Endobugula sertula
Ian J. Miller et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Polytheonamide biosynthesis showcasing the metabolic potential of sponge-associated uncultivated 'Entotheonella' bacteria
Michael F. Freeman et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2016)
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum
Stefan Spring et al.
ISME JOURNAL (2016)
Biosynthesis of polyketides by trans-AT polyketide synthases
Eric J. N. Helfrich et al.
NATURAL PRODUCT REPORTS (2016)
Metagenomic Analysis of the Sponge Discodermia Reveals the Production of the Cyanobacterial Natural Product Kasumigamide by 'Entotheonella'
Yu Nakashima et al.
PLOS ONE (2016)
Diversity, structure and convergent evolution of the global sponge microbiome
Torsten Thomas et al.
NATURE COMMUNICATIONS (2016)
Protective tunicate endosymbiont with extreme genome reduction
Jan-Christoph Kehr et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Metabolic and evolutionary origin of actin-binding polyketides from diverse organisms
Reiko Ueoka et al.
NATURE CHEMICAL BIOLOGY (2015)
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Hongshan Jiang et al.
BMC BIOINFORMATICS (2014)
Isolation and diversity of natural product biosynthetic genes of cultivable bacteria associated with marine sponge Mycale sp from the coast of Fujian, China
Pei Su et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2014)
Marine Sponge Derived Natural Products between 2001 and 2010: Trends and Opportunities for Discovery of Bioactives
Mohammad Ferdous Mehbub et al.
MARINE DRUGS (2014)
An environmental bacterial taxon with a large and distinct metabolic repertoire
Micheal C. Wilson et al.
NATURE (2014)
Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont
Toshiyuki Wakimoto et al.
NATURE CHEMICAL BIOLOGY (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Defensive Bacteriome Symbiont with a Drastically Reduced Genome
Atsushi Nakabachi et al.
CURRENT BIOLOGY (2013)
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen et al.
NATURE BIOTECHNOLOGY (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Genomics-Driven Discovery of Burkholderic Acid, a Noncanonical, Cryptic Polyketide from Human Pathogenic Burkholderia Species
Jakob Franke et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2012)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Malleilactone, a Polyketide Synthase-Derived Virulence Factor Encoded by the Cryptic Secondary Metabolome of Burkholderia pseudomallei Group Pathogens
John B. Biggins et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
Isolation, biological activity, synthesis, and medicinal chemistry of the pederin/mycalamide family of natural products
R. Adam Mosey et al.
NATURAL PRODUCT REPORTS (2012)
Genomic insights into the marine sponge microbiome
Ute Hentschel et al.
NATURE REVIEWS MICROBIOLOGY (2012)
The NCBI Taxonomy database
Scott Federhen
NUCLEIC ACIDS RESEARCH (2012)
Genome streamlining and chemical defense in a coral reef symbiosis
Jason C. Kwan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Chemical Ecology of Sponges on Caribbean Reefs: Natural Products Shape Natural Systems
Joseph R. Pawlik
BIOSCIENCE (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
The pharmaceutical value of marine biodiversity for anti-cancer drug discovery
Patrick M. Erwin et al.
ECOLOGICAL ECONOMICS (2010)
1,5-Diazacyclohenicosane, a New Cytotoxic Metabolite from the Marine Sponge Mycale sp.
Laura Coello et al.
MARINE DRUGS (2009)
A free-standing condensation enzyme catalyzing ester bond formation in C-1027 biosynthesis
Shuangjun Lin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection
Tuanh Nguyen et al.
NATURE BIOTECHNOLOGY (2008)
Azumamides A-E: Histone deacetylase inhibitory cyclic tetrapeptides from the marine sponge Mycale izuensis
Yoichi Nakao et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)
Biosynthesis of marine natural products: macroorganisms (Part B)
Bradley S. Moore
NATURAL PRODUCT REPORTS (2006)
Spatial and temporal variability of cytotoxic metabolites in populations of the New Zealand sponge Mycale hentscheli
M Page et al.
JOURNAL OF CHEMICAL ECOLOGY (2005)
Exploring the chemistry of uncultivated bacterial symbionts: Antitumor polyketides of the pederin family
J Piel et al.
JOURNAL OF NATURAL PRODUCTS (2005)
Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei
J Piel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Oxidase domains in epothilone and bleomycin biosynthesis: Thiazoline to thiazole oxidation during chain elongation
TL Schneider et al.
BIOCHEMISTRY (2003)
A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles
J Piel
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
An oxidation domain in the BLmIII non-ribosomal peptide synthetase probably catalyzing thiazole formation in the biosynthesis of the anti-tumor drug bleomycin in Streptomyces verticillus ATCC15003
LC Du et al.
FEMS MICROBIOLOGY LETTERS (2000)
Isolation and characterization of the epothilone biosynthetic gene cluster from Sorangium cellulosum
B Julien et al.
GENE (2000)
Peloruside A:: A potent cytotoxic macrolide isolated from the New Zealand marine sponge Mycale sp.
LM West et al.
JOURNAL OF ORGANIC CHEMISTRY (2000)