相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The impact of transposable elements on the structure, evolution and function of the rice genome
Roland Akakpo et al.
NEW PHYTOLOGIST (2020)
Transposition favors the generation of large effect mutations that may facilitate rapid adaption
Leandro Quadrana et al.
NATURE COMMUNICATIONS (2019)
Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower
Delfina Gagliardi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
Jeremy Berthelier et al.
BMC GENOMICS (2018)
Transposable elements, genome evolution and transgenerational epigenetic variation
Aoi Hosaka et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2018)
Transposons: a blessing curse
Manu J. Dubin et al.
CURRENT OPINION IN PLANT BIOLOGY (2018)
Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention
Kyria Roessler et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
Silong Sun et al.
NATURE GENETICS (2018)
Immune receptor genes and pericentromeric transposons as targets of common epigenetic regulatory elements
Damian A. Cambiagno et al.
PLANT JOURNAL (2018)
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Rudi Appels et al.
SCIENCE (2018)
MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes
Juan Manuel Crescente et al.
BMC BIOINFORMATICS (2018)
Ten things you should know about transposable elements
Guillaume Bourque et al.
GENOME BIOLOGY (2018)
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
Michael Alaux et al.
GENOME BIOLOGY (2018)
Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum
Rosalia Cristina Paz et al.
GENETICA (2017)
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
Ming-Cheng Luo et al.
NATURE (2017)
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
Helene Badouin et al.
NATURE (2017)
Integration site selection by retroviruses and transposable elements in eukaryotes
Tania Sultana et al.
NATURE REVIEWS GENETICS (2017)
Impact of transposable elements on polyploid plant genomes
Carlos M. Vicient et al.
ANNALS OF BOTANY (2017)
MaizeGDB update: new tools, data and interface for the maize model organism database
Carson M. Andorf et al.
NUCLEIC ACIDS RESEARCH (2016)
Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
Roy N. Platt et al.
GENOME BIOLOGY AND EVOLUTION (2016)
The First Rule of Plant Transposable Element Silencing: Location, Location, Location
Meredith J. Sigman et al.
PLANT CELL (2016)
Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes
Dongying Gao et al.
GENOME BIOLOGY (2016)
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
Dario Copetti et al.
BMC GENOMICS (2015)
Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
Domitille Chalopin et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm
Meilina Ong-Abdullah et al.
NATURE (2015)
A new approach for annotation of transposable elements using small RNA mapping
Moaine El Baidouri et al.
NUCLEIC ACIDS RESEARCH (2015)
Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
Irina Makarevitch et al.
PLOS GENETICS (2015)
A call for benchmarking transposable element annotation methods
Douglas R. Hoen et al.
MOBILE DNA (2015)
A Deluge of Complex Repeats: The Solanum Genome
Mrigaya Mehra et al.
PLOS ONE (2015)
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades
Tony Heitkam et al.
PLANT JOURNAL (2014)
PASTEC: An Automatic Transposable Element Classification Tool
Claire Hoede et al.
PLOS ONE (2014)
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes
Wenwei Xiong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Natural occurring epialleles determine vitamin E accumulation in tomato fruits
Leandro Quadrana et al.
NATURE COMMUNICATIONS (2014)
Potatoes for Sustainable Global Food Security
Andre Devaux et al.
POTATO RESEARCH (2014)
Improving prokaryotic transposable elements identification using a combination of de novo and profile HMM methods
Choumouss Kamoun et al.
BMC GENOMICS (2013)
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
Naturally occurring allele diversity allows potato cultivation in northern latitudes
Bjorn Kloosterman et al.
NATURE (2013)
The Norway spruce genome sequence and conifer genome evolution
Bjorn Nystedt et al.
NATURE (2013)
MIPS PlantsDB: a database framework for comparative plant genome research
Thomas Nussbaumer et al.
NUCLEIC ACIDS RESEARCH (2013)
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin
Hidetoshi Saze et al.
NATURE COMMUNICATIONS (2013)
Transposable Elements Re-Wire and Fine-Tune the Transcriptome
Michael Cowley et al.
PLOS GENETICS (2013)
Transposon Variants and Their Effects on Gene Expression in Arabidopsis
Xi Wang et al.
PLOS GENETICS (2013)
Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges
Eugenio Butelli et al.
PLANT CELL (2012)
Genome sequence and analysis of the tuber crop potato
Xun Xu et al.
NATURE (2011)
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
Ikhlak Ahmed et al.
NUCLEIC ACIDS RESEARCH (2011)
Considering Transposable Element Diversification in De Novo Annotation Approaches
Timothee Flutre et al.
PLOS ONE (2011)
SoyTEdb: a comprehensive database of transposable elements in the soybean genome
Jianchang Du et al.
BMC GENOMICS (2010)
Miniature Inverted-Repeat Transposable Elements of Stowaway Are Active in Potato
Masaki Momose et al.
GENETICS (2010)
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson et al.
NATURE (2009)
A transposon-induced epigenetic change leads to sex determination in melon
Antoine Martin et al.
NATURE (2009)
Distribution, diversity, evolution, and survival of Helitrons in the maize genome
Lixing Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Patrick S. Schnable et al.
SCIENCE (2009)
Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
Regina S. Baucom et al.
PLOS GENETICS (2009)
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
David Ellinghaus et al.
BMC BIOINFORMATICS (2008)
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
H. Kuang et al.
GENOME RESEARCH (2008)
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit
Han Xiao et al.
SCIENCE (2008)
A unified classification system for eukaryotic transposable elements
Thomas Wicker et al.
NATURE REVIEWS GENETICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
De novo identification of repeat families in large genomes
AL Price et al.
BIOINFORMATICS (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Allelic variation at the VRN-1 promoter region in polyploid wheat
L Yan et al.
THEORETICAL AND APPLIED GENETICS (2004)
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants
S Ouyang et al.
NUCLEIC ACIDS RESEARCH (2004)
LTR_STRUC: a novel search and identification program for LTR retrotransposons
EM McCarthy et al.
BIOINFORMATICS (2003)
PlantSat: a specialized database for plant satellite repeats
J Macas et al.
BIOINFORMATICS (2002)