相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms
Shengdan Wu et al.
MOLECULAR PLANT (2020)
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
Zheng Li et al.
GIGASCIENCE (2020)
wgd-simple command line tools for the analysis of ancient whole-genome duplications
Arthur Zwaenepoel et al.
BIOINFORMATICS (2019)
Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments
Ning Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Origin of angiosperms and the puzzle of the Jurassic gap
Hong-Tao Li et al.
NATURE PLANTS (2019)
Disparity, diversity, and duplications in the Caryophyllales
Stephen A. Smith et al.
NEW PHYTOLOGIST (2018)
Impact of whole-genome duplication events on diversification rates in angiosperms
Jacob B. Landis et al.
AMERICAN JOURNAL OF BOTANY (2018)
Double the Genome, Double the Fun: Genome Duplications in Angiosperms
Yuannian Jiao
MOLECULAR PLANT (2018)
Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms
Ren Ren et al.
MOLECULAR PLANT (2018)
Discovery of a diverse cave flora in China
Alexandre K. Monro et al.
PLOS ONE (2018)
A genome for gnetophytes and early evolution of seed plants
Tao Wan et al.
NATURE PLANTS (2018)
A novel hotspot of vertebrate endemism and an evolutionary refugium in tropical Australia
Paul M. Oliver et al.
DIVERSITY AND DISTRIBUTIONS (2017)
Genome sequence and genetic diversity of European ash trees
Elizabeth S. A. Sollars et al.
NATURE (2017)
Speciation history of a species complex of Primulina eburnea (Gesneriaceae) from limestone karsts of southern China, a biodiversity hot spot
Jing Wang et al.
EVOLUTIONARY APPLICATIONS (2017)
Genomic Signature of Adaptive Divergence despite Strong Nonadaptive Forces on Edaphic Islands: A Case Study of Primulina juliae
Jing Wang et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Both temperature fluctuations and East Asian monsoons have driven plant diversification in the karst ecosystems from southern China
Hanghui Kong et al.
MOLECULAR ECOLOGY (2017)
Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower
Patrick P. Edger et al.
PLANT CELL (2017)
Time-calibrated phylogenetic trees establish a lag between polyploidisation and diversification in Nicotiana (Solanaceae)
James J. Clarkson et al.
PLANT SYSTEMATICS AND EVOLUTION (2017)
Genome of wild olive and the evolution of oil biosynthesis
Turgay Unver et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Scallop genome provides insights into evolution of bilaterian karyotype and development
Shi Wang et al.
NATURE ECOLOGY & EVOLUTION (2017)
The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies
Chao Feng et al.
BMC EVOLUTIONARY BIOLOGY (2017)
Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard
Celine Geiser et al.
PLANT CELL (2016)
Ancient WGD events as drivers of key innovations in angiosperms
Pamela S. Soltis et al.
CURRENT OPINION IN PLANT BIOLOGY (2016)
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Yi Zheng et al.
MOLECULAR PLANT (2016)
Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
Zhen Li et al.
PLANT CELL (2016)
Distinct Processes Drive Diversification in Different Clades of Gesneriaceae
Eric H. Roalson et al.
SYSTEMATIC BIOLOGY (2016)
Generic recircumscription in the Loxocarpinae (Gesneriaceae), as inferred by phylogenetic and morphological data
Carmen Puglisi et al.
TAXON (2016)
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
Jian Huang et al.
PLOS GENETICS (2016)
Geographical pattern of isolation and diversification in karst habitat islands: a case study in the Primulina eburnea complex
Yong Gao et al.
JOURNAL OF BIOGEOGRAPHY (2015)
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
Ya Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
David C. Tank et al.
NEW PHYTOLOGIST (2015)
The butterfly plant arms-race escalated by gene and genome duplications
Patrick P. Edger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Early genome duplications in conifers and other seed plants
Zheng Li et al.
SCIENCE ADVANCES (2015)
Untangling the influence of phylogeny, soil and climate on leaf element concentrations in a biodiversity hotspot
Zhuan Hao et al.
FUNCTIONAL ECOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Comparative transcriptome resources of eleven Primulina species, a group of 'stone plants' from a biodiversity hot spot
Bin Ai et al.
MOLECULAR ECOLOGY RESOURCES (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Are polyploids really evolutionary dead-ends ( again)? A critical reappraisal of Mayrose et al. (2011)
Douglas E. Soltis et al.
NEW PHYTOLOGIST (2014)
Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
Ya Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Adaptive and nonadaptive genome size evolution in Karst endemic flora of China
Ming Kang et al.
NEW PHYTOLOGIST (2014)
Allopolyploidy, diversification, and the Miocene grassland expansion
Matt C. Estep et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Genome sequencing and population genomics in non-model organisms
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2014)
Phylogenetic analyses of Begonia sect. Coelocentrum and allied limestone species of China shed light on the evolution of Sino-Vietnamese karst flora
Kuo-Fang Chung et al.
BOTANICAL STUDIES (2014)
Polyploidy and its effect on evolutionary success: old questions revisited with new tools
A. Madlung
HEREDITY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
Zhang Zhang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model
M. Eric Schranz et al.
CURRENT OPINION IN PLANT BIOLOGY (2012)
i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets
Sebastian Proost et al.
NUCLEIC ACIDS RESEARCH (2012)
Diversity, classification and function of the plant protein kinase superfamily
Melissa D. Lehti-Shiu et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Recently Formed Polyploid Plants Diversify at Lower Rates
Itay Mayrose et al.
SCIENCE (2011)
Circoletto: visualizing sequence similarity with Circos
Nikos Darzentas
BIOINFORMATICS (2010)
PInTFDB: updated content and new features of the plant transcription factor database
Paulino Perez-Rodriguez et al.
NUCLEIC ACIDS RESEARCH (2010)
WRKY transcription factors
Paul J. Rushton et al.
TRENDS IN PLANT SCIENCE (2010)
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
Dapeng Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2010)
POLYPLOIDY AND ANGIOSPERM DIVERSIFICATION
Douglas E. Soltis et al.
AMERICAN JOURNAL OF BOTANY (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
OPINION The evolutionary significance of ancient genome duplications
Yves Van de Peer et al.
NATURE REVIEWS GENETICS (2009)
Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
Xiaolan Wu et al.
PLANT CELL REPORTS (2009)
Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses
Yuanqing Jiang et al.
PLANT MOLECULAR BIOLOGY (2009)
The frequency of polyploid speciation in vascular plants
Troy E. Wood et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Evolutionary Genetics of Genome Merger and Doubling in Plants
Jeff J. Doyle et al.
ANNUAL REVIEW OF GENETICS (2008)
Genomic clues to the evolutionary success of review polyploid plants
Matthew J. Hegarty et al.
CURRENT BIOLOGY (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Widespread genome duplications throughout the history of flowering plants
Liying Cui et al.
GENOME RESEARCH (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Modeling gene and genome duplications in eukaryotes
S Maere et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Is genome size influenced by colonization of new environments in dipteran species?
C Nardon et al.
MOLECULAR ECOLOGY (2005)
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
C Seoighe et al.
TRENDS IN GENETICS (2004)
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
BIOINFORMATICS (2003)
Transcription factors in plant defense and stress responses
KB Singh et al.
CURRENT OPINION IN PLANT BIOLOGY (2002)
The origins of genomic duplications in Arabidopsis
TJ Vision et al.
SCIENCE (2000)
分享论文
