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Pier Selenica et al.
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Alejandro Jimenez-Sanchez et al.
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Fresia Pareja et al.
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Shannon Grabosch et al.
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Allen W. Zhang et al.
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John R. Stevens et al.
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Giuseppe Narzisi et al.
COMMUNICATIONS BIOLOGY (2018)
Post-selection inference for 1-penalized likelihood models
Jonathan Taylor et al.
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Expansion of the Gene Ontology knowledgebase and resources
S. Carbon et al.
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Dan R. Robinson et al.
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Yi Kan Wang et al.
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Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy
Teresa Davoli et al.
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Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors
Viktor A. Adalsteinsson et al.
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Ellen L. Goode et al.
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The immune system in cancer metastasis: friend or foe?
Louise M. E. Janssen et al.
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Genomic and immune heterogeneity are associated with differential responses to therapy in melanoma
Alexandre Reuben et al.
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Roderik M. Kortlever et al.
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Michael J. Topper et al.
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xCell: digitally portraying the tissue cellular heterogeneity landscape
Dvir Aran et al.
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TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells
Taiwen Li et al.
CANCER RESEARCH (2017)
Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient
Alejandro Jimenez-Sanchez et al.
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Tumor-Residing Batf3 Dendritic Cells Are Required for Effector T Cell Trafficking and Adoptive T Cell Therapy
Stefani Spranger et al.
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Primary, Adaptive, and Acquired Resistance to Cancer Immunotherapy
Padmanee Sharma et al.
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EXACT POST-SELECTION INFERENCE, WITH APPLICATION TO THE LASSO
Jason D. Lee et al.
ANNALS OF STATISTICS (2016)
Effector T Cells Abrogate Stroma-Mediated Chemoresistance in Ovarian Cancer
Weimin Wang et al.
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Neoadjuvant Chemotherapy Modulates the Immune Microenvironment in Metastases of Tubo-Ovarian High-Grade Serous Carcinoma
Steffen Bohm et al.
CLINICAL CANCER RESEARCH (2016)
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
Andrew McPherson et al.
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FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
Ronglai Shen et al.
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Stefani Spranger et al.
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MYC regulates the antitumor immune response through CD47 and PD-L1
Stephanie C. Casey et al.
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Vishwajith Sridharan et al.
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Eishu Hirata et al.
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Luciano G. Martelotto et al.
JOURNAL OF PATHOLOGY (2015)
Wnt ligand-dependent activation of the negative feedback regulator Nkd1
Jahdiel Larraguibel et al.
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Whole-genome characterization of chemoresistant ovarian cancer
Ann-Marie Patch et al.
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Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
Stefani Spranger et al.
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Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes
Sachet A. Shukla et al.
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Subclonal diversification of primary breast cancer revealed by multiregion sequencing
Lucy R. Yates et al.
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Wolfgang Huber et al.
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Robust enumeration of cell subsets from tissue expression profiles
Aaron M. Newman et al.
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Matthew E. Ritchie et al.
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Machine-based method for multiplex in situ molecular characterization of tissues by immunofluorescence detection
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The Molecular Signatures Database Hallmark Gene Set Collection
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Takanori Kitamura et al.
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TITAN: inference of copy number architectures, in clonal cell populations from tumor whole-genome sequence data
Gavin Ha et al.
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GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Haenzelmann et al.
BMC BIOINFORMATICS (2013)
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Gabriela Bindea et al.
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Kristian Cibulskis et al.
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Kosuke Yoshihara et al.
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Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs
Christopher T. Saunders et al.
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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt et al.
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Ovarian cancer progression is controlled by phenotypic changes in dendritic cells
Uciane K. Scarlett et al.
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Molecular signatures database (MSigDB) 3.0
Arthur Liberzon et al.
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Assessment of Ki67 in Breast Cancer: Recommendations from the International Ki67 in Breast Cancer Working Group
Mitch Dowsett et al.
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Integrated genomic analyses of ovarian carcinoma
D. Bell et al.
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
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Ashour Ahmed Ahmed et al.
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Regularization Paths for Generalized Linear Models via Coordinate Descent
Jerome Friedman et al.
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A method and server for predicting damaging missense mutations
Ivan A. Adzhubei et al.
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Allele-specific copy number analysis of tumors
Peter Van Loo et al.
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Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
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Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
David A. Barbie et al.
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Python for scientific computing
Travis E. Oliphant
COMPUTING IN SCIENCE & ENGINEERING (2007)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
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affy -: analysis of Affymetrix GeneChip data at the probe level
L Gautier et al.
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A Niida et al.
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PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
VK Mootha et al.
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Isometric logratio transformations for compositional data analysis
JJ Egozcue et al.
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Intratumoral T cells, recurrence, and survival in epithelial ovarian cancer
L Zhang et al.
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Development of a syngeneic mouse model for events related to ovarian cancer
KF Roby et al.
CARCINOGENESIS (2000)