相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly
Sreejith J. Nair et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
Jeffrey M. Alexander et al.
ELIFE (2019)
Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
Nezha S. Benabdallah et al.
MOLECULAR CELL (2019)
The Energetics and Physiological Impact of Cohesin Extrusion
Laura Vian et al.
CELL (2018)
Regulation of RNA polymerase II processivity by Spt5 is restricted to a narrow window during elongation
Johanna Fitz et al.
EMBO JOURNAL (2018)
Widespread transcriptional pausing and elongation control at enhancers
Telmo Henriques et al.
GENES & DEVELOPMENT (2018)
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription
Olga Mikhaylichenko et al.
GENES & DEVELOPMENT (2018)
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities
Sarah Rennie et al.
NUCLEIC ACIDS RESEARCH (2018)
Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II
Barbara Steurer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
Bo Gu et al.
SCIENCE (2018)
Dynamic interplay between enhancer-promoter topology and gene activity
Hongtao Chen et al.
NATURE GENETICS (2018)
The RNA exosome contributes to gene expression regulation during stem cell differentiation
Marta Lloret-Llinares et al.
NUCLEIC ACIDS RESEARCH (2018)
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Takashi Nagano et al.
NATURE (2017)
Paused RNA polymerase II inhibits new transcriptional initiation
Wanqing Shao et al.
NATURE GENETICS (2017)
Inducible CTCF insulator delays the IgH 3′ regulatory region-mediated activation of germline promoters and alters class switching
Fatima-Zohra Braikia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
CDK9-dependent RNA polymerase II pausing controls transcription initiation
Saskia Gressel et al.
ELIFE (2017)
CCCTC-Binding Factor Locks Premature IgH Germline Transcription and Restrains Class Switch Recombination
Ester Marina-Zarate et al.
FRONTIERS IN IMMUNOLOGY (2017)
Bidirectional transcription initiation marks accessible chromatin and is not specific to enhancers
Robert S. Young et al.
GENOME BIOLOGY (2017)
Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement
Thomas Germier et al.
BIOPHYSICAL JOURNAL (2017)
Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry
Junghyun Lim et al.
CELL (2017)
Combinatorial function of transcription factors and cofactors
Franziska Reiter et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)
RNA Binding to CBP Stimulates Histone Acetylation and Transcription
Daniel A. Bose et al.
CELL (2017)
Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination
Anne-Sophie Thomas-Claudepierre et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2016)
Unlinking an lncRNA from Its Associated cis Element
Vikram R. Paralkar et al.
MOLECULAR CELL (2016)
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Jesse M. Engreitz et al.
NATURE (2016)
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
Dig Bijay Mahat et al.
NATURE PROTOCOLS (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity
Evangelos Pefanis et al.
CELL (2015)
Constraints Contributed by Chromatin Looping Limit Recombination Targeting during Ig Class Switch Recombination
Scott Feldman et al.
JOURNAL OF IMMUNOLOGY (2015)
Cyclin-Dependent Kinases Regulate Ig Class Switching by Controlling Access of AID to the Switch Region
Minghui He et al.
JOURNAL OF IMMUNOLOGY (2015)
Highly efficient Cas9-mediated transcriptional programming
Alejandro Chavez et al.
NATURE METHODS (2015)
Elucidation of IgH 3′ region regulatory role during class switch recombination via germline deletion
Alexis Saintamand et al.
NATURE COMMUNICATIONS (2015)
Genome-wide Mapping and Characterization of Notch-Regulated Long Noncoding RNAs in Acute Leukemia
Thomas Trimarchi et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
Simone Picelli et al.
GENOME RESEARCH (2014)
IgH Chain Class Switch Recombination: Mechanism and Regulation
Janet Stavnezer et al.
JOURNAL OF IMMUNOLOGY (2014)
Enhancer RNA Facilitates NELF Release from Immediate Early Genes
Katie Schaukowitch et al.
MOLECULAR CELL (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
Leighton J. Core et al.
NATURE GENETICS (2014)
Transcriptional enhancers: from properties to genome-wide predictions
Daria Shlyueva et al.
NATURE REVIEWS GENETICS (2014)
Stage-Specific Binding Profiles of Cohesin in Resting and Activated B Lymphocytes Suggest a Role for Cohesin in Immunoglobulin Class Switching and Maturation
Gamze Guenal-Sadik et al.
PLOS ONE (2014)
Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Iris Jonkers et al.
ELIFE (2014)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation
Kyong-Rim Kieffer-Kwon et al.
CELL (2013)
CTCF and Cohesin: Linking Gene Regulatory Elements with Their Targets
Matthias Merkenschlager et al.
CELL (2013)
The cohesin complex regulates immunoglobulin class switch recombination
Anne-Sophie Thomas-Claudepierre et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2013)
eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription
Carlos A. Melo et al.
MOLECULAR CELL (2013)
eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci
Kambiz Mousavi et al.
MOLECULAR CELL (2013)
Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription
Minna U. Kaikkonen et al.
MOLECULAR CELL (2013)
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
Wenbo Li et al.
NATURE (2013)
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
Fan Lai et al.
NATURE (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
Hojoong Kwak et al.
SCIENCE (2013)
Organization of the Mitotic Chromosome
Natalia Naumova et al.
SCIENCE (2013)
Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena
Ursula E. Schoeberl et al.
GENES & DEVELOPMENT (2012)
Defining the Status of RNA Polymerase at Promoters
Leighton J. Core et al.
CELL REPORTS (2012)
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation
Vlad C. Seitan et al.
NATURE (2011)
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
Dong Wang et al.
NATURE (2011)
XPB, a subunit of TFIIH, is a target of the natural product triptolide
Denis V. Titov et al.
NATURE CHEMICAL BIOLOGY (2011)
Triptolide (TPL) Inhibits Global Transcription by Inducing Proteasome-Dependent Degradation of RNA Polymerase II (Pol II)
Ying Wang et al.
PLOS ONE (2011)
Genomic deletion of the whole IgH 3′ regulatory region (hs3a, hs1,2, hs3b, and hs4) dramatically affects class switch recombination and Ig secretion to all isotypes
Christelle Vincent-Fabert et al.
BLOOD (2010)
Activation-Induced Cytidine Deaminase Targets DNA at Sites of RNA Polymerase II Stalling by Interaction with Spt5
Rushad Pavri et al.
CELL (2010)
In Vivo Redundant Function of the 3′ IgH Regulatory Element HS3b in the Mouse
Anne-Gaelle Bebin et al.
JOURNAL OF IMMUNOLOGY (2010)
Mediator and cohesin connect gene expression and chromatin architecture
Michael H. Kagey et al.
NATURE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Transcription regulation through promoter-proximal pausing of RNA polymerase II
Leighton J. Core et al.
SCIENCE (2008)
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
Leighton J. Core et al.
SCIENCE (2008)
S-S Synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase
Robert Wuerffe et al.
IMMUNITY (2007)
Regulation of hypermutation by activation-induced cytidine dearninase phosphorylation
Kevin M. McBride et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Class-switch recombination: Interplay of transcription, DNA deamination and DNA repair
J Chaudhuri et al.
NATURE REVIEWS IMMUNOLOGY (2004)
Elucidation of a downstream boundary of the 3 ' IgH regulatory region
JP Manis et al.
MOLECULAR IMMUNOLOGY (2003)
Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo
SH Chao et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Localization of the 3′ IgH locus elements that effect long-distance regulation of class switch recombination
E Pinaud et al.
IMMUNITY (2001)
Domains in the SPT5 protein that modulate its transcriptional regulatory properties
D Ivanov et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
M Muramatsu et al.
CELL (2000)