4.8 Article

A complete domain-to-species taxonomy for Bacteria and Archaea

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

International Code of Nomenclature of Prokaryotes Prokaryotic Code (2008 Revision)

Charles T. Parker et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Biotechnology & Applied Microbiology

The importance of designating type material for uncultured taxa

Maria Chuvochina et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

I-Min A. Chen et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis

Lorenz Christian Reimer et al.

NUCLEIC ACIDS RESEARCH (2019)

Letter Medical Laboratory Technology

Practical problems when incorporating rapidly changing microbial taxonomy into clinical practice

Alexander J. Fenwick et al.

CLINICAL CHEMISTRY AND LABORATORY MEDICINE (2019)

Review Microbiology

LPSN - List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on

Aidan C. Parte

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI

Stacy Ciufo et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Article Evolutionary Biology

Biological Species Are Universal across Life's Domains

Louis-Marie Bobay et al.

GENOME BIOLOGY AND EVOLUTION (2017)

Article Ecology

Uncultivated microbes in need of their own taxonomy

Konstantinos T. Konstantinidis et al.

ISME JOURNAL (2017)

Article Biotechnology & Applied Microbiology

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Robert M. Bowers et al.

NATURE BIOTECHNOLOGY (2017)

Article Biotechnology & Applied Microbiology

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

Supratim Mukherjee et al.

NATURE BIOTECHNOLOGY (2017)

Article Microbiology

A large-scale evaluation of algorithms to calculate average nucleotide identity

Seok-Hwan Yoon et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Assembly: a resource for assembled genomes at NCBI

Paul A. Kitts et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

Nuala A. O'Leary et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Microbiology

Modest proposals to expand the type material for naming of prokaryotes

William B. Whitman

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Review Microbiology

A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?

George M. Garrity

JOURNAL OF CLINICAL MICROBIOLOGY (2016)

Article Microbiology

A new view of the tree of life

Laura A. Hug et al.

NATURE MICROBIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Biochemistry & Molecular Biology

Microbial species delineation using whole genome sequences

Neha J. Varghese et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

Genome sequences as the type material for taxonomic descriptions of prokaryotes

William B. Whitman

SYSTEMATIC AND APPLIED MICROBIOLOGY (2015)

Review Biochemistry & Molecular Biology

Microbial Malaise: How Can We Classify the Microbiome?

Robert G. Beiko

TRENDS IN MICROBIOLOGY (2015)

Editorial Material Microbiology

Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

Cristiane C. Thompson et al.

ARCHIVES OF MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Type material in the NCBI Taxonomy Database

Scott Federhen

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

StrainInfo introduces electronic passports for microorganisms

Bert Verslyppe et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2014)

Editorial Material Biochemistry & Molecular Biology

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

Nikos C. Kyrpides et al.

PLOS BIOLOGY (2014)

Editorial Material Biology

Fuzzy species revisited

William P. Hanage

BMC BIOLOGY (2013)

Article Biochemistry & Molecular Biology

The Sequence Read Archive

Rasko Leinonen et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Accelerated Profile HMM Searches

Sean R. Eddy

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Microbiology

Brucella taxonomy and evolution

Thomas Ficht

FUTURE MICROBIOLOGY (2010)

Review Infectious Diseases

Historical evolution and current status of the taxonomy of genus Pseudomonas

Alvaro Peix et al.

INFECTION GENETICS AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Multidisciplinary Sciences

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

Christophe Fraser et al.

SCIENCE (2009)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biology

The bacterial species definition in the genomic era

Konstantinos T. Konstantinidis et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Microbiology

Towards a genome-based taxonomy for prokaryotes

KT Konstantinidis et al.

JOURNAL OF BACTERIOLOGY (2005)

Article Multidisciplinary Sciences

Genomic insights that advance the species definition for prokaryotes

KT Konstantinidis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Immunology

Escherichia coli in disguise:: molecular origins of Shigella

RT Lan et al.

MICROBES AND INFECTION (2002)