相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Is there a future for artisanal fishing in the Amazon? The case of Arapaima gigas
Carolina Rodrigues da Costa Doria et al.
MANAGEMENT OF BIOLOGICAL INVASIONS (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Katherine R. Amato et al.
ISME JOURNAL (2019)
Host-Microbe Coevolution: Applying Evidence from Model Systems to Complex Marine Invertebrate Holobionts
Paul A. O'Brien et al.
MBIO (2019)
Disentangling the effect of host-genotype and environment on the microbiomie of the coral Acropora tenuis
Bettina Glasl et al.
PEERJ (2019)
A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals
Andrea M. Quattrini et al.
BMC EVOLUTIONARY BIOLOGY (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Phylosymbiosis Impacts Adaptive Traits in Nasonia Wasps
Edward J. van Opstal et al.
MBIO (2019)
Reduced diversity and stability of coral-associated bacterial communities and suppressed immune function precedes disease onset in corals
F. Joseph Pollock et al.
ROYAL SOCIETY OPEN SCIENCE (2019)
Methods for normalizing microbiome data: An ecological perspective
Donald T. McKnight et al.
METHODS IN ECOLOGY AND EVOLUTION (2019)
Occurrence of the potent mutagens 2-nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles
Aldenor G. Santos et al.
SCIENTIFIC REPORTS (2019)
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2019)
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
Katherine R. Amato et al.
GENOME BIOLOGY (2019)
Microbial communities exhibit host species distinguishability and phylosymbiosis along the length of the gastrointestinal tract
Kevin D. Kohl et al.
MOLECULAR ECOLOGY (2018)
In This Issue
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Exploring the diversity-stability paradigm using sponge microbial communities
Bettina Glasl et al.
SCIENTIFIC REPORTS (2018)
Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses
Deepak Kumaresan et al.
MICROBIOME (2018)
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Stefan Janssen et al.
MSYSTEMS (2018)
A Comparative Analysis of Microbial DNA Preparation Methods for Use With Massive and Branching Coral Growth Forms
Alejandra Hernandez-Agreda et al.
FRONTIERS IN MICROBIOLOGY (2018)
Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
F. Joseph Pollock et al.
NATURE COMMUNICATIONS (2018)
Finer-Scale Phylosymbiosis: Insights from Insect Viromes
Brittany A. Leigh et al.
MSYSTEMS (2018)
Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?
Florent Mazel et al.
MSYSTEMS (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
In situ click chemistry generation of cyclooxygenase-2 inhibitors
Atul Bhardwaj et al.
NATURE COMMUNICATIONS (2017)
Bacterial community dynamics are linked to patterns of coral heat tolerance
Maren Ziegler et al.
NATURE COMMUNICATIONS (2017)
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
Mathieu Groussin et al.
NATURE COMMUNICATIONS (2017)
Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site
R. Piredda et al.
FEMS MICROBIOLOGY ECOLOGY (2017)
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
Alma E. Parada et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance
Bettina Glasl et al.
ISME JOURNAL (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts
Angela E. Douglas et al.
mBio (2016)
Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History
Andrew W. Brooks et al.
PLOS BIOLOGY (2016)
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
Amy Apprill et al.
AQUATIC MICROBIAL ECOLOGY (2015)
Stable symbionts across the HMA-LMA dichotomy: low seasonal and interannual variation in sponge-associated bacteria from taxonomically diverse hosts
Patrick M. Erwin et al.
FEMS MICROBIOLOGY ECOLOGY (2015)
Microbial aggregates within tissues infect a diversity of corals throughout the Indo-Pacific
Thierry M. Work et al.
MARINE ECOLOGY PROGRESS SERIES (2014)
Community Shifts in the Surface Microbiomes of the Coral Porites astreoides with Unusual Lesions
Julie L. Meyer et al.
PLOS ONE (2014)
Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges
Cole G. Easson et al.
FRONTIERS IN MICROBIOLOGY (2014)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
Soeren Franzenburg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia
Robert M. Brucker et al.
SCIENCE (2013)
THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES
Robert M. Brucker et al.
EVOLUTION (2012)
Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides
Koty H. Sharp et al.
ISME JOURNAL (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Thermal and Sedimentation Stress Are Unlikely Causes of Brown Spot Syndrome in the Coral Reef Sponge, lanthella basta
Heidi M. Luter et al.
PLOS ONE (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Molecular Phylogenetic Insights into the Evolution of Octocorallia: A Review
Catherine S. McFadden et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2010)
Threatened Corals Provide Underexplored Microbial Habitats
Shinichi Sunagawa et al.
PLOS ONE (2010)
CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
Judith Poeppe et al.
PLOS ONE (2010)
Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities
Howard Ochman et al.
PLOS BIOLOGY (2010)
The onset of microbial associations in the coral Pocillopora meandrina
Amy Apprill et al.
ISME JOURNAL (2009)
Changes in coral-associated microbial communities during a bleaching event
David Bourne et al.
ISME JOURNAL (2008)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
DAMBE: Software package for data analysis in molecular biology and evolution
X Xia et al.
JOURNAL OF HEREDITY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
