4.7 Article

The loss of photosynthesis pathway and genomic locations of the lost plastid genes in a holoparasitic plant Aeginetia indica

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Magic-BLAST, an accurate RNA-seq aligner for long and short reads

Grzegorz M. Boratyn et al.

BMC BIOINFORMATICS (2019)

Article Multidisciplinary Sciences

Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora

Huei-Jiun Su et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biology

Punctuated plastome reduction and host-parasite horizontal gene transfer in the holoparasitic plant genus Aphyllon

Adam C. Schneider et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)

Article Evolutionary Biology

Horizontal Gene Transfer in Five Parasite Plant Species in Orobanchaceae

Tomoyuki Kado et al.

GENOME BIOLOGY AND EVOLUTION (2018)

Article Multidisciplinary Sciences

Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants

Susann Wicke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae)

Jeanmaire Molina et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Plant Sciences

PHYLOGENY AND ORIGINS OF HOLOPARASITISM IN OROBANCHACEAE

Joel R. McNeal et al.

AMERICAN JOURNAL OF BOTANY (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

Susann Wicke et al.

PLANT MOLECULAR BIOLOGY (2011)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Plant Sciences

Phylogenetic relationships within the tropical clade of Orobanchaceae

Jeffery J. Morawetz et al.

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Genetics & Heredity

Plastid signalling to the nucleus: messengers still lost in the mists?

Tatjana Kleine et al.

TRENDS IN GENETICS (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Review Plant Sciences

Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A

Jonathan R. Bennett et al.

AMERICAN JOURNAL OF BOTANY (2006)

Article Biochemistry & Molecular Biology

Mosaic origin of the heme biosynthesis pathway in photosynthetic eukaryotes

M Oborník et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemical Research Methods

Automatic annotation of organellar genomes with DOGMA

SK Wyman et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat

AS Perry et al.

JOURNAL OF MOLECULAR EVOLUTION (2002)

Review Biochemistry & Molecular Biology

Participation of nuclear genes in chloroplast gene expression

A Barkan et al.

BIOCHIMIE (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)