相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Systematics: The Cohesive Nature of Bacterial Species Taxa
Frederick M. Cohan
CURRENT BIOLOGY (2019)
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach et al.
NATURE (2019)
Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
Spencer Diamond et al.
NATURE MICROBIOLOGY (2019)
A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
Philip Arevalo et al.
CELL (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
Matthew R. Olm et al.
SCIENCE ADVANCES (2019)
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
Robert C. Edgar
BIOINFORMATICS (2018)
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
Benjamin J. Tully et al.
SCIENTIFIC DATA (2018)
Differential depth distribution of microbial function and putative symbionts through sediment- hosted aquifers in the deep terrestrial subsurface
Alexander J. Probst et al.
NATURE MICROBIOLOGY (2018)
Genome-centric view of carbon processing in thawing permafrost
Ben J. Woodcroft et al.
NATURE (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
Matthew R. Olm et al.
ISME JOURNAL (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla
Joanne B. Emerson et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
NSimScan: DNA comparison tool with increased speed, sensitivity and accuracy
Vladimir Novichkov et al.
BIOINFORMATICS (2016)
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Mobile genes in the human microbiome are structured from global to individual scales
I. L. Brito et al.
NATURE (2016)
Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria
Trinity L. Hamilton et al.
FRONTIERS IN MICROBIOLOGY (2016)
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
Yemin Lan et al.
MICROBIOME (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Unusual biology across a group comprising more than 15% of domain Bacteria
Christopher T. Brown et al.
NATURE (2015)
Back to Basics - The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
Mads Albertsen et al.
PLOS ONE (2015)
Microbial Speciation
B. Jesse Shapiro et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2015)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing
Feng Guo et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2013)
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen et al.
NATURE BIOTECHNOLOGY (2013)
Bacterial species may exist, metagenomics reveal
Alejandro Caro-Quintero et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Individual genome assembly from complex community short-read metagenomic datasets
Chengwei Luo et al.
ISME JOURNAL (2012)
Population Genomics of Early Events in the Ecological Differentiation of Bacteria
B. Jesse Shapiro et al.
SCIENCE (2012)
Patterns of Gene Flow Define Species of Thermophilic Archaea
Hinsby Cadillo-Quiroz et al.
PLOS BIOLOGY (2012)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
The dynamic genetic repertoire of microbial communities
Paul Wilmes et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
Konstantinos T. Konstantinidis et al.
ISME JOURNAL (2008)
Recombination and the nature of bacterial speciation
Christophe Fraser et al.
SCIENCE (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
Genetic exchange across a species boundary in the archaeal genus ferroplasma
John M. Eppley et al.
GENETICS (2007)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha et al.
JOURNAL OF THEORETICAL BIOLOGY (2006)
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis et al.
JOURNAL OF BACTERIOLOGY (2005)
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Re-evaluating prokaryotic species
D Gevers et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
分享论文
