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Zhe Hou et al.
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Congrui Sun et al.
JOURNAL OF FORESTRY RESEARCH (2018)
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Shuai Guo et al.
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Sajjad Asaf et al.
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Xuelin Wang et al.
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Xuan Li et al.
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Jipeng Mao et al.
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Zhen Li et al.
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ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
Shaun D. Jackman et al.
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How introns enhance gene expression
Orit Shaul
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GeSeq - versatile and accurate annotation of organelle genomes
Michael Tillich et al.
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Inferring the evolutionary mechanism of the chloroplast genome size by comparing wholechloroplast genome sequences in seed plants
Zheng Xiao-Ming et al.
SCIENTIFIC REPORTS (2017)
Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
Andan Zhu et al.
NEW PHYTOLOGIST (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
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Comparison of intraspecific, interspecific and intergeneric chloroplast diversity in Cycads
Guo-Feng Jiang et al.
SCIENTIFIC REPORTS (2016)
Chloroplast genomes: diversity, evolution, and applications in genetic engineering
Henry Daniell et al.
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Genetic diversity and phylogenetic relationships of citron (Citrus medica L.) and its relatives in southwest China
Xiaoming Yang et al.
TREE GENETICS & GENOMES (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
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The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species
Yanzhen Zhang et al.
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Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers
Chung-Shien Wu et al.
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Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Recent advances in the study of chloroplast gene expression and its evolution
Yusuke Yagi et al.
FRONTIERS IN PLANT SCIENCE (2014)
A REVIEW OF THE PREVALENCE, UTILITY, AND CAVEATS OF USING CHLOROPLAST SIMPLE SEQUENCE REPEATS FOR STUDIES OF PLANT BIOLOGY
Gregory L. Wheeler et al.
APPLICATIONS IN PLANT SCIENCES (2014)
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Chung-Shien Wu et al.
GENOME BIOLOGY AND EVOLUTION (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
Ching-Ping Lin et al.
GENOME BIOLOGY AND EVOLUTION (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)
Xiaojun Nie et al.
PLOS ONE (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
Chung-Shien Wu et al.
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Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
Mary M. Guisinger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
Chung-Shien Wu et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)
Complete nucleotide sequence of the Cryptomeria japonicia D. Don. chloroplast genome and comparative chloroplast genomics:: diversified genomic structure of coniferous species
Tomonori Hirao et al.
BMC PLANT BIOLOGY (2008)
Glacial refugia of Ginkgo biloba and human impact on its genetic diversity: Evidence from chloroplast DNA
Wei Gong et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2008)
The CGView Server: a comparative genomics tool for circular genomes
Jason R. Grant et al.
NUCLEIC ACIDS RESEARCH (2008)
An update on chloroplast genomes
V. Ravi et al.
PLANT SYSTEMATICS AND EVOLUTION (2008)
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
Michael J. Moore et al.
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Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
Chung-Shien Wu et al.
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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner et al.
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Genetic variation of Ginkgo biloba L. (Ginkgoaceae) based on cpDNA PCR-RFLPs:: inference of glacial refugia
L Shen et al.
HEREDITY (2005)
Insertion-deletion biases and the evolution of genome size
TR Gregory
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Automatic annotation of organellar genomes with DOGMA
SK Wyman et al.
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Versatile and open software for comparing large genomes
S Kurtz et al.
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Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
T Thiel et al.
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Evolution of the chloroplast genome
CJ Howe et al.
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REPuter: the manifold applications of repeat analysis on a genomic scale
S Kurtz et al.
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VISTA:: visualizing global DNA sequence alignments of arbitrary length
C Mayor et al.
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