4.8 Article

Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

JASPAR 2020: update of the open-access database of transcription factor binding profiles

Oriol Fornes et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

Emily R. Miraldi et al.

GENOME RESEARCH (2019)

Article Multidisciplinary Sciences

Open chromatin dynamics in prosensory cells of the embryonic mouse cochlea

Brent A. Wilkerson et al.

SCIENTIFIC REPORTS (2019)

Article Multidisciplinary Sciences

Search-and-replace genome editing without double-strand breaks or donor DNA

Andrew V. Anzalone et al.

NATURE (2019)

Article Biotechnology & Applied Microbiology

Optimized base editors enable efficient editing in cells, organoids and mice

Maria Paz Zafra et al.

NATURE BIOTECHNOLOGY (2018)

Article Dentistry, Oral Surgery & Medicine

Whole-genome sequencing in a pair of monozygotic twins with discordant cleft lip and palate subtypes

Masahiro Takahashi et al.

ORAL DISEASES (2018)

Article Multidisciplinary Sciences

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

Jeffrey A. Farrell et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

Daniel E. Wagner et al.

SCIENCE (2018)

Article Cell Biology

High-Resolution Epigenomic Atlas of Human Embryonic Craniofacial Development

Andrea Wilderman et al.

CELL REPORTS (2018)

Article Biochemical Research Methods

Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties

Ling Chen et al.

PLOS COMPUTATIONAL BIOLOGY (2018)

Article Biochemical Research Methods

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel et al.

NATURE METHODS (2017)

Article Medicine, Research & Experimental

Inhibition of periderm removal in all-trans retinoic acid-induced cleft palate in mice

Ya-Dong Zhang et al.

EXPERIMENTAL AND THERAPEUTIC MEDICINE (2017)

Article Mathematical & Computational Biology

A sequence-based method to predict the impact of regulatory variants using random forest

Qiao Liu et al.

BMC SYSTEMS BIOLOGY (2017)

Article Genetics & Heredity

A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3

Elizabeth J. Leslie et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2016)

Article Biochemical Research Methods

gkmSVM: an R package for gapped-kmer SVM

Mahmoud Ghandi et al.

BIOINFORMATICS (2016)

Article Developmental Biology

Integrin signalling regulates YAP and TAZ to control skin homeostasis

Ahmed Elbediwy et al.

DEVELOPMENT (2016)

Article Biotechnology & Applied Microbiology

Near-optimal probabilistic RNA-seq quantification

Nicolas L. Bray et al.

NATURE BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Editorial Material Cell Biology

Dynamic Networking for Epidermal Differentiation

Rachel Hemdon Klein et al.

DEVELOPMENTAL CELL (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Multidisciplinary Sciences

YAP is essential for tissue tension to ensure vertebrate 3D body shape

Sean Porazinski et al.

NATURE (2015)

Article Genetics & Heredity

A method to predict the impact of regulatory variants from DNA sequence

Dongwon Lee et al.

NATURE GENETICS (2015)

Article Genetics & Heredity

Dominant Mutations in GRHL3 Cause Van der Woude Syndrome and Disrupt Oral Periderm Development

Myriam Peyrard-Janvid et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

Matthew T. Weirauch et al.

Article Biochemistry & Molecular Biology

An etiologic regulatory mutation in IRF6 with loss- and gain-of-function effects

Walid D. Fakhouri et al.

HUMAN MOLECULAR GENETICS (2014)

Article Medicine, Research & Experimental

Periderm prevents pathological epithelial adhesions during embryogenesis

Rebecca J. Richardson et al.

JOURNAL OF CLINICAL INVESTIGATION (2014)

Article Medicine, Research & Experimental

A GRHL3-regulated repair pathway suppresses immune-mediated epidermal hyperplasia

William M. Gordon et al.

JOURNAL OF CLINICAL INVESTIGATION (2014)

Article Multidisciplinary Sciences

Basal Keratinocytes Contribute to All Strata of the Adult Zebrafish Epidermis

Raymond T. H. Lee et al.

PLOS ONE (2014)

Article Biochemical Research Methods

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features

Mahmoud Ghandi et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Developmental Biology

Notch signaling represses p63 expression in the developing surface ectoderm

Ana Mafalda Baptista Tadeu et al.

DEVELOPMENT (2013)

Article Dermatology

Interferon Regulatory Factor 6 Promotes Differentiation of the Periderm by Activating Expression of Grainyhead-Like 3

Gabriel de la Garza et al.

JOURNAL OF INVESTIGATIVE DERMATOLOGY (2013)

Article Biochemistry & Molecular Biology

CCAAT/Enhancer Binding Protein-α Regulates the Protease/Antiprotease Balance Required for Bronchiolar Epithelium Regeneration

Atsuyasu Sato et al.

AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2012)

Article Anatomy & Morphology

MCS9.7 enhancer activity is highly, but not completely, associated with expression of Irf6 and p63

Walid D. Fakhouri et al.

DEVELOPMENTAL DYNAMICS (2012)

Review Developmental Biology

The epigenome in early vertebrate development

Ozren Bogdanovic et al.

GENESIS (2012)

Article Neurosciences

Coordinate development of skin cells and cutaneous sensory axons in zebrafish

Georgeann S. O'Brien et al.

JOURNAL OF COMPARATIVE NEUROLOGY (2012)

Article Multidisciplinary Sciences

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

Caryn S. Ross-Innes et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Roger Pique-Regi et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

seqMINER: an integrated ChIP-seq data interpretation platform

Tao Ye et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Site-specific integrase-mediated transgenesis in mice via pronuclear injection

Bosiljka Tasic et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas

Elisabetta Botti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux et al.

PLOS BIOLOGY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Developmental Biology

poky/chuk/ikk1 is required for differentiation of the zebrafish embryonic epidermis

Cindy Fukazawa et al.

DEVELOPMENTAL BIOLOGY (2010)

Article Dentistry, Oral Surgery & Medicine

Developmental changes in cellular and extracellular structural macromolecules in the secondary palate and in the nasal cavity of the mouse

Forugh Vaziri Sani et al.

EUROPEAN JOURNAL OF ORAL SCIENCES (2010)

Article Biotechnology & Applied Microbiology

GREAT improves functional interpretation of cis-regulatory regions

Cory Y. McLean et al.

NATURE BIOTECHNOLOGY (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Cell Biology

Network design principles from the sea urchin embryo

Eric H. Davidson

CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)

Article Genetics & Heredity

Disruption of an AP-2α binding site in an IRF6 enhancer is associated with cleft lip

Fedik Rahimov et al.

NATURE GENETICS (2008)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Article Cell Biology

Mice deficient in involucrin, envoplakin, and periplakin have a defective epidermal barrier

Lisa M. Sevilla et al.

JOURNAL OF CELL BIOLOGY (2007)

Article Developmental Biology

An early requirement for maternal FoxH1 during zebrafish gastrulation

Wuhong Pei et al.

DEVELOPMENTAL BIOLOGY (2007)

Article Developmental Biology

Multiple functions of Snail family genes during palate development in mice

Stephen A. Murray et al.

DEVELOPMENT (2007)

Article Dentistry, Oral Surgery & Medicine

Alteration of cell-cycle regulatory proteins in human oral epithelial cells immortalized by HPV16 E6 and E7

P. Sdek et al.

INTERNATIONAL JOURNAL OF ORAL AND MAXILLOFACIAL SURGERY (2006)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Dentistry, Oral Surgery & Medicine

Identification of markers of the midface

SG Gong et al.

JOURNAL OF DENTAL RESEARCH (2005)

Article Dentistry, Oral Surgery & Medicine

Establishment of a human polyclonal oral epithelial cell line

EP Gilchrist et al.

ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2000)