4.5 Review

From parts lists to functional significance-RNA-protein interactions in gene regulation

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Minna-Liisa Aenkoe et al.

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JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

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RBPDB: a database of RNA-binding specificities

Kate B. Cook et al.

NUCLEIC ACIDS RESEARCH (2011)

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Protein-RNA and Protein-Protein Recognition by Dual KH1/2 Domains of the Neuronal Splicing Factor Nova-1

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Yoseph Barash et al.

NATURE (2010)

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Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis

Magdalena Strzelecka et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

Julian Koenig et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

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Review Biochemistry & Molecular Biology

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Thomas A. Cooper et al.

Review Cell Biology

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Charles S. Bond et al.

JOURNAL OF CELL BIOLOGY (2009)

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SR Protein Family Members Display Diverse Activities in the Formation of Nascent and Mature mRNPs In Vivo

Aparna K. Sapra et al.

MOLECULAR CELL (2009)

Article Multidisciplinary Sciences

Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation

Clifford P. Brangwynne et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Structural Basis of m7GpppG Binding to Poly(A)-Specific Ribonuclease

Mousheng Wu et al.

STRUCTURE (2009)

Review Biotechnology & Applied Microbiology

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Peter J. Shepard et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Polypyrimidine-tract-binding protein: a multifunctional RNA-binding protein

Kirsty Sawicka et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2008)

Review Biochemistry & Molecular Biology

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Antoine Clery et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Structure and function of KH domains

Roberto Valverde et al.

FEBS JOURNAL (2008)

Article Multidisciplinary Sciences

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Donny D. Licatalosi et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

Takashi Nagata et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

RS domain-splicing signal interactions in splicing of U12-type and U2-type introns

Haihong Shen et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Review Cell Biology

RNA-binding proteins: modular design for efficient function

Bradley M. Lunde et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

The KH and S1 domains of Escherichia coli polynucleotide phosphorylase are necessary for autoregulation and growth at low temperature

Maura Epifania Matus-Ortega et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2007)

Article Biotechnology & Applied Microbiology

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

John N. Hutchinson et al.

BMC GENOMICS (2007)

Article Biochemistry & Molecular Biology

Structural and biochemical characterization of the yeast exosome component Rrp40

Anna Oddone et al.

EMBO REPORTS (2007)

Article Biochemistry & Molecular Biology

Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8

Yann Hargous et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells

Imke Listerman et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Conformation of polypyrimidine tract binding protein in solution

Maxim V. Petoukhov et al.

STRUCTURE (2006)

Article Biochemical Research Methods

Analysis of RNA-protein interactions by a microplate-based fluorescence anisotropy assay

CJ Mao et al.

ANALYTICAL BIOCHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1

SD Auweter et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

Serine/arginine-rich splicing factors belong to a class of intrinsically disordered proteins

C Haynes et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

CLIP: A method for identifying protein-RNA interaction sites in living cells

J Ule et al.

METHODS (2005)

Article Biochemistry & Molecular Biology

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex

J Görnemann et al.

MOLECULAR CELL (2005)

Review Biochemistry & Molecular Biology

Multiple modes of RNA recognition by zinc finger proteins

TMT Hall

CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

RS domains contact the pre-mRNA throughout spliceosome assembly

KJ Hertel et al.

TRENDS IN BIOCHEMICAL SCIENCES (2005)

Review Biochemistry & Molecular Biology

Sam68, the KH domain-containing superSTAR

KE Lukong et al.

BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER (2003)

Article Biochemistry & Molecular Biology

Modular recognition of RNA by a human pumilio-homology domain

XQ Wang et al.

Review Multidisciplinary Sciences

An extensive network of coupling among gene expression machines

T Maniatis et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

Paraspeckles: A novel nuclear domain

AH Fox et al.

CURRENT BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Zinc finger proteins: new insights into structural and functional diversity

JH Laity et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)

Article Biochemistry & Molecular Biology

KH domain: one motif, two folds

NV Grishin

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemistry & Molecular Biology

Sik (BRK) phosphorylates Sam68 in the nucleus and negatively regulates its RNA binding ability

JJ Derry et al.

MOLECULAR AND CELLULAR BIOLOGY (2000)