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Clemence Marchal et al.
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Lindsay R. Triplett et al.
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Zhiyuan Ji et al.
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Burkhard Steuernagel et al.
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Mark J. Chaisson et al.
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Takashi Endo et al.
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Adam J. Bogdanove et al.
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Jing Li et al.
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Heng Li et al.
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Chuntai Wang et al.
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Sharon A. Hall et al.
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A novel bacterial blight resistance gene from Oryza nivara mapped to 38 kb region on chromosome 4L and transferred to Oryza sativa L.
Kuljit K. Cheema et al.
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Stephan Ossowski et al.
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Structure-function analysis of the NB-ARC domain of plant disease resistance proteins
Gerben Van Ooijen et al.
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Yanchun Yu et al.
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Xin Xu et al.
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Richard M. Clark et al.
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Q He et al.
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An Arabidopsis hAT-like transposase is essential for plant development
P Bundock et al.
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GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
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Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes
D Leister
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XL Sun et al.
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S Schornack et al.
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WebLogo: A sequence logo generator
GE Crooks et al.
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Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes
T Zhou et al.
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Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
BC Meyers et al.
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Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato
A Bendahmane et al.
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