相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Sterol transfer by atypical cholesterol-binding NPC2 proteins in coral-algal symbiosis
Elizabeth Ann Hambleton et al.
ELIFE (2019)
Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in Fugacium kawagutii
Senjie Lin et al.
MICROORGANISMS (2019)
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Alex L. Mitchell et al.
NUCLEIC ACIDS RESEARCH (2019)
Glucose-Induced Trophic Shift in an Endosymbiont Dinoflagellate with Physiological and Molecular Consequences
Tingting Xiang et al.
PLANT PHYSIOLOGY (2018)
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes
Eiichi Shoguchi et al.
BMC GENOMICS (2018)
Phylogenetic characterization of transporter proteins in the cnidarian-dinoflagellate symbiosis
Ashley E. Sproles et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)
Using Aiptasia as a Model to Study Metabolic Interactions in Cnidarian-Symbiodinium Symbioses
Nils Raedecker et al.
FRONTIERS IN PHYSIOLOGY (2018)
Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium
Michal Sorek et al.
MICROBIOME (2018)
Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
Todd C. LaJeunesse et al.
CURRENT BIOLOGY (2018)
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Johan Decelle et al.
CURRENT BIOLOGY (2018)
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
Huanle Liu et al.
COMMUNICATIONS BIOLOGY (2018)
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium
Ral A. Gonzalez-Pech et al.
SCIENTIFIC REPORTS (2017)
Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum
Yi Jin Liew et al.
PLOS GENETICS (2017)
Expression of a symbiosis-specific gene in Symbiodinium type A1 associated with coral, nudibranch and giant clam larvae
M. Mies et al.
ROYAL SOCIETY OPEN SCIENCE (2017)
DeepLoc: prediction of protein subcellular localization using deep learning
Jose Juan Almagro Armenteros et al.
BIOINFORMATICS (2017)
Menthol-induced bleaching rapidly and effectively provides experimental aposymbiotic sea anemones (Aiptasia sp.) for symbiosis investigations
Jennifer L. Matthews et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2016)
Symbiosis induces widespread changes in the proteome of the model cnidarian Aiptasia
Clinton A. Oakley et al.
CELLULAR MICROBIOLOGY (2016)
Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent Symbiodinium Thermal Tolerances
Rachel A. Levin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome
A. R. Mohamed et al.
MOLECULAR ECOLOGY (2016)
Evolution of symbiosis in hermatypic corals: A model of the past, present, and future
Peter L. Antonelli et al.
NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS (2016)
Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants
Shifeng Cheng et al.
PLANT JOURNAL (2016)
GLUT, SGLT, and SWEET: Structural and mechanistic investigations of the glucose transporters
Dong Deng et al.
PROTEIN SCIENCE (2016)
Aiptasia sp larvae as a model to reveal mechanisms of symbiont selection in cnidarians
Iliona Wolfowicz et al.
SCIENTIFIC REPORTS (2016)
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
M. Aranda et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Partitioning of nitrogen sources to algal endosymbionts of corals with long-term 15N-labelling and a mixing model
Yasuaki Tanaka et al.
ECOLOGICAL MODELLING (2015)
A Compartmental Comparison of Major Lipid Species in a Coral-Symbiodinium Endosymbiosis: Evidence that the Coral Host Regulates Lipogenesis of Its Cytosolic Lipid Bodies
Hung-Kai Chen et al.
PLOS ONE (2015)
The genome of Aiptasia, a sea anemone model for coral symbiosis
Sebastian Baumgarten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
Senjie Lin et al.
SCIENCE (2015)
Structure and function of SemiSWEET and SWEET sugar transporters
Liang Feng et al.
TRENDS IN BIOCHEMICAL SCIENCES (2015)
Nitrogen cycling in corals: the key to understanding holobiont functioning?
Nils Raedecker et al.
TRENDS IN MICROBIOLOGY (2015)
Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification
Didier Zoccola et al.
SCIENTIFIC REPORTS (2015)
Morphological Variability and Distinct Protein Profiles of Cultured and Endosymbiotic Symbiodinium cells Isolated from Exaiptasia pulchella
Buntora Pasaribu et al.
SCIENTIFIC REPORTS (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud
Enis Afgan et al.
PLOS ONE (2015)
Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform
Shu Zhang et al.
GENE (2014)
Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome
Sutada Mungpakdee et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Are Niemann-Pick type C proteins key players in cnidarian-dinoflagellate endosymbioses?
Vincent Dani et al.
MOLECULAR ECOLOGY (2014)
Morphological revision of the genus Aiptasia and the family Aiptasiidae (Cnidaria, Actiniaria, Metridioidea)
Alejandro Grajales et al.
ZOOTAXA (2014)
Extensive Differences in Gene Expression Between Symbiotic and Aposymbiotic Cnidarians
Erik M. Lehnert et al.
G3-GENES GENOMES GENETICS (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
Sebastian Baumgarten et al.
BMC GENOMICS (2013)
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
Eiichi Shoguchi et al.
CURRENT BIOLOGY (2013)
Transcriptomics in the RNA-seq era
Paul A. McGettigan
CURRENT OPINION IN CHEMICAL BIOLOGY (2013)
Isolation of clonal axenic strains of the symbiotic dinoflagellate Symbiodinium and their growth and host specificity
Tingting Xiang et al.
JOURNAL OF PHYCOLOGY (2013)
iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins
Wei-Zhong Lin et al.
MOLECULAR BIOSYSTEMS (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Highly Dynamic Cellular-Level Response of Symbiotic Coral to a Sudden Increase in Environmental Nitrogen
C. Kopp et al.
MBIO (2013)
A single-cell view of ammonium assimilation in coral-dinoflagellate symbiosis
Mathieu Pernice et al.
ISME JOURNAL (2012)
What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses
Richard G. Dorrell et al.
JOURNAL OF CELL SCIENCE (2012)
Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
Matthew S. Burriesci et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Cell Biology of Cnidarian-Dinoflagellate Symbiosis
Simon K. Davy et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2012)
Heterotrophic feeding as a newly identified survival strategy of the dinoflagellate Symbiodinium
Hae Jin Jeong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Increased susceptibility of algal symbionts to photo-inhibition resulting from the perturbation of coral gastrodermal membrane trafficking
Chen Chii-Shiarng et al.
SCIENCE CHINA-LIFE SCIENCES (2012)
Plant LysM proteins: modules mediating symbiosis and immunity
Andrea A. Gust et al.
TRENDS IN PLANT SCIENCE (2012)
Leucine-rich repeat (LRR) proteins Integrators of pattern recognition and signaling in immunity
Aylwin Ng et al.
AUTOPHAGY (2011)
Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition
Jeanine S. Morey et al.
BMC GENOMICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The evolution of RNA editing and pentatricopeptide repeat genes
Sota Fujii et al.
NEW PHYTOLOGIST (2011)
MemPype: a pipeline for the annotation of eukaryotic membrane proteins
Andrea Pierleoni et al.
NUCLEIC ACIDS RESEARCH (2011)
Lipid bodies in coral-dinoflagellate endosymbiosis: Proteomic and ultrastructural studies
Shao-En Peng et al.
PROTEOMICS (2011)
Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis
E. Charlotte E. Kvennefors et al.
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2010)
A method for extracting a high-quality RNA from Symbiodinium sp.
Nedeljka N. Rosic et al.
JOURNAL OF APPLIED PHYCOLOGY (2010)
Sugar transporters for intercellular exchange and nutrition of pathogens
Li-Qing Chen et al.
NATURE (2010)
A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0
Kuo-Chen Chou et al.
PLOS ONE (2010)
Symbiosis-dependent gene expression in coral-dinoflagellate association: cloning and characterization of a P-type H+-ATPase gene
Anthony Bertucci et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Proteomic analysis of symbiosome membranes in Cnidaria-dinoflagellate endosymbiosis
Shao-En Peng et al.
PROTEOMICS (2010)
Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals
Andrew H. Baird et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Ratiometric imaging of gastrodermal lipid bodies in coral-dinoflagellate endosymbiosis
Y. -J. Luo et al.
CORAL REEFS (2009)
Control of phosphate uptake by zooxanthellae and host cells in the scleractinian coral Stylophora pistillata
C. Godinot et al.
LIMNOLOGY AND OCEANOGRAPHY (2009)
Unlocking the molecular secrets of sodium-coupled transporters
Harini Krishnamurthy et al.
NATURE (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Uric acid deposits in symbiotic marine algae
Peta L. Clode et al.
PLANT CELL AND ENVIRONMENT (2009)
Imaging intracellular pH in a reef coral and symbiotic anemone
A. A. Venn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts
E. Charlotte E. Kvennefors et al.
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2008)
Metabolic interactions between algal symbionts and invertebrate hosts
David Yellowlees et al.
PLANT CELL AND ENVIRONMENT (2008)
Environmental populations of symbiotic dinoflagellates in the genus Symbiodinium can initiate symbioses with reef cnidarians
Mary Alice Coffroth et al.
CURRENT BIOLOGY (2006)
Transcriptome analysis of a cnidarian-dinoflagellate mutualism reveals complex modulation of host gene expression
M Rodriguez-Lanetty et al.
BMC GENOMICS (2006)
Corals as light collectors: an integrating sphere approach
N Stambler et al.
CORAL REEFS (2005)
Comparison of stress susceptibility of in hospite and isolated zooxanthellae among five coral species
R Bhagooli et al.
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2003)
Roles of Vibrio fischeri and nonsymbiotic bacteria in the dynamics of mucus secretion during symbiont colonization of the Euprymna scolopes light organ
SV Nyholm et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Uptake of ammonium by the scleractinian coral Stylophora pistillata:: Effect of feeding, light, and ammonium concentrations
R Grover et al.
LIMNOLOGY AND OCEANOGRAPHY (2002)
The leucine-rich repeat as a protein recognition motif
B Kobe et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)
Development of host- and symbiont-specific monoclonal antibodies and confirmation of the origin of the symbiosome membrane in a cnidarian-dinoflagellate symbiosis
TS Wakefield et al.
BIOLOGICAL BULLETIN (2001)
Revised description of the fine structure of in situ Zooxanthellae genus Symbiodinium
TS Wakefield et al.
BIOLOGICAL BULLETIN (2000)
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
O Emanuelsson et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Sugar transporters in higher plants - A diversity of roles and complex regulation
LE Williams et al.
TRENDS IN PLANT SCIENCE (2000)
Involvement of H+-ATPase and carbonic anhydrase in inorganic carbon uptake for endosymbiont photosynthesis
P Furla et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2000)
分享论文
