4.7 Article

The ankyrin repeat gene family in Capsicum spp: Genome-wide survey, characterization and gene expression profile

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

20 years of the SMART protein domain annotation resource

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biology

Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants

Peiyan Guan et al.

ARCHIVES OF BIOLOGICAL SCIENCES (2018)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

HMMER web server: 2018 update

Simon C. Potter et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Plant Sciences

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

Amanda M. Hulse-Kemp et al.

HORTICULTURE RESEARCH (2018)

Article Environmental Sciences

Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean

Dayong Zhang et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2016)

Review Plant Sciences

Expansion and Function of Repeat Domain Proteins During Stress and Development in Plants

Manisha Sharma et al.

FRONTIERS IN PLANT SCIENCE (2016)

Article Multidisciplinary Sciences

Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum annuum L

Padma Nimmakayala et al.

SCIENTIFIC REPORTS (2016)

Review Plant Sciences

Molecular insights into the function of ankyrin proteins in plants

Kieu Thi Xuan Vo et al.

JOURNAL OF PLANT BIOLOGY (2015)

Article Biochemical Research Methods

The Phyre2 web portal for protein modeling, prediction and analysis

Lawrence A. Kelley et al.

NATURE PROTOCOLS (2015)

Article Biochemistry & Molecular Biology

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

Tauno Metsalu et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

R. Gonzalo Parra et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

GSDS 2.0: an upgraded gene feature visualization server

Bo Hu et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Identifying tandem Ankyrin repeats in protein structures

Broto Chakrabarty et al.

BMC BIOINFORMATICS (2014)

Article Agriculture, Multidisciplinary

Enzymatic Changes in Phenylalanine Ammonia-Iyase, Cinnamic-4-hydroxylase, Capsaicin Synthase, and Peroxidase Activities in Capsicum under Drought Stress

Paongpetch Phimchan et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Linkage disequilibrium and population-structure analysis among Capsicum annuum L. cultivars for use in association mapping

Padma Nimmakayala et al.

MOLECULAR GENETICS AND GENOMICS (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

Cheng Qin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Cell Biology

Genome-wide identification and expression profiling of ankyrin-repeat gene family in maize

Haiyang Jiang et al.

DEVELOPMENT GENES AND EVOLUTION (2013)

Article Genetics & Heredity

Superfamily of ankyrin repeat proteins in tomato

Xiaowei Yuan et al.

Article Multidisciplinary Sciences

Global Analysis of Ankyrin Repeat Domain C3HC4-Type RING Finger Gene Family in Plants

Xiaowei Yuan et al.

PLOS ONE (2013)

Article Biochemistry & Molecular Biology

Tandem repeats in proteins: From sequence to structure

Andrey V. Kajava

JOURNAL OF STRUCTURAL BIOLOGY (2012)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Mathematical & Computational Biology

In silico Analysis Reveals the Presence of a Large Number of Ankyrin Repeat Containing Proteins in Ectocarpus siliculosus

Niaz Mahmood et al.

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES (2012)

Article Biochemistry & Molecular Biology

Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.)

Hongjian Wan et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2011)

Article Biochemistry & Molecular Biology

Stress tolerance to stress escape in plants: role of the OXS2 zinc-finger transcription factor family

Robert Blanvillain et al.

EMBO JOURNAL (2011)

Review Plant Sciences

Root K+ Acquisition in Plants: The Arabidopsis thaliana Model

Fernando Aleman et al.

PLANT AND CELL PHYSIOLOGY (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Genetics & Heredity

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

Dapeng Wang et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling

Jianyan Huang et al.

PLANT MOLECULAR BIOLOGY (2009)

Review Evolutionary Biology

Evolution after gene duplication: Models, mechanisms, sequences, systems, and organisms

Christian Roth et al.

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2007)

Article Biochemical Research Methods

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Ankyrin repeat: A unique motif mediating protein-protein interactions

Junan Li et al.

BIOCHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance

Yong-Sheng Wang et al.

PLANT CELL (2006)

Article Biochemistry & Molecular Biology

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

Edouard de Castro et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

Protein homology detection by HMM-HMM comparison

J Söding

BIOINFORMATICS (2005)

Review Biochemistry & Molecular Biology

The ankyrin repeat as molecular architecture for protein recognition

LK Mosavi et al.

PROTEIN SCIENCE (2004)

Article Biochemistry & Molecular Biology

ExPASy: the proteomics server for in-depth protein knowledge and analysis

E Gasteiger et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Ankyrin protein kinases: a novel type of plant kinase gene whose expression is induced by osmotic stress in alfalfa

D Chinchilla et al.

PLANT MOLECULAR BIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Getting positive about selection

EV Koonin et al.

GENOME BIOLOGY (2003)